Gene Avin_23960 details

Gene Information

• Locus tag: Avin_23960
• Symbol: alyA2
• ID: 7761311
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Azotobacter vinelandii DJ
• Kingdom: Bacteria
• Replicon accession: NC_012560
• Strand: +
• Start bp: 2395224
• End bp: 2395946
• Gene Length: 723 bp
• Protein Length: 240 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 643805281
• Product: alginate lyase
• Protein accession: YP_002799558
• Protein GI: 226944485

Plasmid Coverage information

• Num covering plasmid clones: 28
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATCGACC TTTCCCACTG GAACCTCACT ATTCCCGTCG ATGCGGAGAT CATCCAGACC 
GAAGATCTGC AGACCTATGC ATCGCCATGG TTTATCCGCA ATGCCGACGG TTCCATTACC 
TTCTTCGCTC CGTCGTCAGG TGACGGGATC AAGTCGACCA AAAACAGCAC GTACCCGCGC 
TCTGAACTCA GGGAAACCTT GCCCAACGGC GACGACGACG AGGCCAACTG GAGCCTCGAT 
AGCGCTCCGG TTCACCAACT GAGTGCAACC TTGACGGTCG ACTCGCTGCC TGCCTCTGGC 
AAGGCAATCA TCGGCCAATT CCACGGCGAG TCCAATCATC CTCCCTTCAA GCTCCAAGTC 
GCGCGGCTGG CCGGCTCGGC CGACACATTC AAGATCAACG TGCAGCACCG GCCGAAGCTG 
AACGGCAAAG AACTGAGGCC GTCCTTTTCC AGGCCGTTCA AGCTGGGCGA GGAGTTCTCC 
TACGATGTGC AGGTCACTTC AACTGGCAAG TTATCTGTGA CCATCGATGA TGAGACGGTA 
AGTGGCCAGT TCGATATCCG CAGTTACAAG AATGACAAAT GGTACGCCAA GGCCGGCATA 
TACAGCCAAG AGATGGTCAG CGGGAAGGGG GCCGGGCGGG CCACCTTCTA TGCGATAGAC 
ATGACGCATG GCGACAAGGC TGGGGATAGG CCAGAGCAAT CGAGGCGCGA ACTCCAGCGC 
TAG 

 

Protein sequence

MIDLSHWNLT IPVDAEIIQT EDLQTYASPW FIRNADGSIT FFAPSSGDGI KSTKNSTYPR 
SELRETLPNG DDDEANWSLD SAPVHQLSAT LTVDSLPASG KAIIGQFHGE SNHPPFKLQV 
ARLAGSADTF KINVQHRPKL NGKELRPSFS RPFKLGEEFS YDVQVTSTGK LSVTIDDETV 
SGQFDIRSYK NDKWYAKAGI YSQEMVSGKG AGRATFYAID MTHGDKAGDR PEQSRRELQR