Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_9665 |
Symbol | |
ID | 7381874 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011991 |
Strand | + |
Start bp | 128401 |
End bp | 129123 |
Gene Length | 723 bp |
Protein Length | 240 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 643653317 |
Product | two-component transcriptional regulator LuxR family |
Protein accession | YP_002551488 |
Protein GI | 222109223 |
COG category | [K] Transcription |
COG ID | [COG2771] DNA-binding HTH domain-containing proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.024682 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAAAAATC ATGACATTTA TGAATTTATG GAACGCTGCG ACAATCAAAA GAGCGTCGAT AATCTGTTTT CGGATTTTGG AACGGTCATC GCGAAACGCG GCTTTCATTC TTACATTTAC ACCGGGCTGC CAGCGGTGGG TGACGACGTC AAGCATTATG TCGTCAAAAA TGCGTGGCCG CCGGGATGGA CCGAGCAATT CGAGGGTCTT AACTATTTCG CCGATGATCC CGTCAGTCGG TGGTCTCTTT CCCAGTCGAA ACCCTTTACC TGGAAAACCG CAAGAGAAGA GACGAAGGCG ACGGCGCGCA CCAAAGAGAT CCAGCAGGAA GCGGACAGGT ATCGCTTGTG CGATGGCATC GTTTTCCCGA TGTTCGACCC AAATTCCTGG CAGTCGGTGA TCTCACTCGC AACTGACGAC AAGGGTGGAT TGGCAAAAGA GAACATTGGC GACCTTTATC TTCTCTCCTC TTATTGTGCG ATGACGGCAA ACAACCTGCT TCGACGCGCC GAACAAGCGG ATCATCGGTT AACAGACCGG GAGAAAGAAA TTCTGCAGTG GGTTTCACGC GGGAAGACGG ATTGGGAGAT CGGGACGATC CTGCGAATGA CCGAGGGCTC CGTTACACAG CGACTGGCCC GCATCCGAGA CACCCTTGGT GTCAAAAATA GACCGCAGAC CGTTTCACAG GCGATTCGGC TCGGCCTGAT CAATTCGGTC TAG
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Protein sequence | MKNHDIYEFM ERCDNQKSVD NLFSDFGTVI AKRGFHSYIY TGLPAVGDDV KHYVVKNAWP PGWTEQFEGL NYFADDPVSR WSLSQSKPFT WKTAREETKA TARTKEIQQE ADRYRLCDGI VFPMFDPNSW QSVISLATDD KGGLAKENIG DLYLLSSYCA MTANNLLRRA EQADHRLTDR EKEILQWVSR GKTDWEIGTI LRMTEGSVTQ RLARIRDTLG VKNRPQTVSQ AIRLGLINSV
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