Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_9655 |
Symbol | trbJ |
ID | 7381869 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011991 |
Strand | - |
Start bp | 122804 |
End bp | 123592 |
Gene Length | 789 bp |
Protein Length | 262 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 643653312 |
Product | conjugal transfer protein TrbJ |
Protein accession | YP_002551483 |
Protein GI | 222109218 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG5314] Conjugal transfer/entry exclusion protein |
TIGRFAM ID | [TIGR02780] P-type conjugative transfer protein TrbJ |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.279512 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTGCGTC GCTCTTTGCT TCGTAATGCC CTTGCCGGTT TGGTCCTCGC CGTCAGCCCA AGCGTCGTCT TCGCCGGCGC TGCAACGGGT GGGGCGACGG AATGGACCCA GCTTCTCAAC AATGCCCAGC TTCTCGAACA GTCGGGGCAG GGGGTCGAAC AGATCGCCAA TCAGACACAG CAGATCGCCC ACCAGGTCAC GCAGATCCAG AACCAGCTCG ACCAGTACCG GACGATGCTG CAGAACCTCG AAAAGCTGCC TGACACCATC TGGGGCCAGG CTCAGAAGGA CCTCAATCGG CTTCGTCAAC TGACCCAGCA GGGGGAGGGC ATCGGCTTCT CGATGGCCAA TCTCGACGAC GTCCTGAAAC AGCGCTTTCC GAGTTTCGAG CAGTTCGCCT CTGGGGTCCA GGGCGGACAG AACTTCTCTC AGCAATATGG GCAGTGGTCA AAGACCAACC GTGACACGAT CGGCGGCACA CTCGCTCAAG CCGGGATGAC GGCGCAGCAG TTCGACACCG AACAAAGCAC CATGAAGCAG TTGCAGGAGC AGTCGCAAAC GTCCGTCGGC CAGATGCAGG CGCTACAGGT CGGCCACTCG ATTGCCAGCC AGCAGGTCGA ACAGATGCAG AAGTTGCGCG GCCTGATCGC CCAGCAATCG ACGATGATGG GCACATGGTA TCAGTCCGAG CAGACCGCCA AGGATCTCGC CCAGCATAAG CGGGAAAGCT TCTTCTCGAG TACCCCGCCG TCGACGTCGG GCGGCCAGAA AATGCAGCCG CGGTGGTAG
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Protein sequence | MLRRSLLRNA LAGLVLAVSP SVVFAGAATG GATEWTQLLN NAQLLEQSGQ GVEQIANQTQ QIAHQVTQIQ NQLDQYRTML QNLEKLPDTI WGQAQKDLNR LRQLTQQGEG IGFSMANLDD VLKQRFPSFE QFASGVQGGQ NFSQQYGQWS KTNRDTIGGT LAQAGMTAQQ FDTEQSTMKQ LQEQSQTSVG QMQALQVGHS IASQQVEQMQ KLRGLIAQQS TMMGTWYQSE QTAKDLAQHK RESFFSSTPP STSGGQKMQP RW
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