Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_9612 |
Symbol | |
ID | 7381952 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011991 |
Strand | - |
Start bp | 81422 |
End bp | 82090 |
Gene Length | 669 bp |
Protein Length | 222 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 643653287 |
Product | transcriptional regulatory protein |
Protein accession | YP_002551458 |
Protein GI | 222109193 |
COG category | [K] Transcription |
COG ID | [COG1802] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.350752 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGACGCGCC AAACCTGCAA TGATTCCACG ACCAGCTATG CGATCTATGA CCGGCTGAAG AACAAGGTGA TGTCGTATGA GTTTTCGCCG TCACAGCAGC TTCAACCGTG GACTTTGGCT GATGAATTCA AAGTTAGCTC GACTCCCGTC CGCGAAGCGC TGATAAGGTT AGGCGCCGAA GGTTTGGTTG CGGTGATGCC CAACAAAGGC TTTTTTATGA AGCCTTTAAA CCCTTCCGAG ATATGCAGCC TTTATGTATT GCGTTCGCAA CTGCTGCGGT ACTCTTTACG GTATTTGCTG GAGCAAAGCC GCTTCTCTGA CCACCGTTCT TTTGTAACCG TGTGGGAAGA GCGACTTTCA GATCTTTCGG CCAGTAGTTG CGCGTTGATT GAAGAGTTCT TCATGGATTG GGTGGACGTT TCGAGGGCTC AAGCTTGTGT TGATACTCTT CAAAACACAA ACGAACGCAC CCGATTTATT CGCTGTTTGT TCACCGAAGA ACCAGCCCGG TCACGGCGGT ACTTGGGCAT CCTACGGGAC TTGGTCCGGC ATATCAAAAG AAGTAACGCA GATGATGCAA TTGATTGCCT GATAACGGAA TTGGACTTCA AGGTCACCTC GGTTCCCGCG CTTTGCAACG AAGGCTTGGT GCGGAGCTTC AGAAACTGA
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Protein sequence | MTRQTCNDST TSYAIYDRLK NKVMSYEFSP SQQLQPWTLA DEFKVSSTPV REALIRLGAE GLVAVMPNKG FFMKPLNPSE ICSLYVLRSQ LLRYSLRYLL EQSRFSDHRS FVTVWEERLS DLSASSCALI EEFFMDWVDV SRAQACVDTL QNTNERTRFI RCLFTEEPAR SRRYLGILRD LVRHIKRSNA DDAIDCLITE LDFKVTSVPA LCNEGLVRSF RN
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