Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_9134 |
Symbol | tnp |
ID | 7367687 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011984 |
Strand | - |
Start bp | 101338 |
End bp | 102495 |
Gene Length | 1158 bp |
Protein Length | 385 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 643644334 |
Product | transposase |
Protein accession | YP_002542631 |
Protein GI | 222083228 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG3547] Transposase and inactivated derivatives |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.220032 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAAGTGA TGATCGAGGG ACAGTCGCAC CTCCAGCCTT TCGGCTTACC TTATTGGGGT TTCGAAAATC TCAATAAAGG AGTTGGAAGC ATGACTGCCT CTTATGATTA CCATATCGGC GTCGACTATC ACAAATCCTA CAGCCACCTG GTGGTGCAGG ACAGTAGCGG TAAGACGCTA CGCTCCGGCC GTGTTAAGAA CGACCGCCAG TCGCTCGGTG GGTTTCTGGA ACGATACCGT GAGAACTCGC ACGCGGTTGT CGAGGCGACG CGCAACTGGA TGGTGATGTA CGACTGGCTC GATGACATTT GTGATGATGT CGTTCTCGCC CATCCGTTGA AGGTCAAGGC GATCGCCGAC GCCAAGATCA AGACCGACAA GATCGACGCG ACTGTGCTGA CGCATCTGCT TAGAGCCGAC CTGGTGCCGG AGGCCTGGGC GCCCGGCGAA CGGGCCCGAG AACTGCGTGT CGCGCTACGT GAGCGGATGT TTTACTTGCG GCTGCGCACG ATGACGAAGA ACCGCATCGT CACGGTGTTC GACCGCTATC CGGAGCAGAC GGCGCAGTTG AAGAAGCTGG GCGACCTGTT CGGCAAGGCC GGCCGCGCTC AGCTCGCGCA GGTCAAGGTC TCAGAGATCG ACCGCATCCA GATCGACCGT GGCCTCGCTT TCATCGGGGA CATCGATGGG CGGATCAAGC AATCGGAAGC AACGATCCGG GCGATGACGA AAGCGAACAC CAATGTGAAG CTGCTCAAGA CGATCCCCGG CATCGGCGAG TTCTTCGCCC GGCTGATCGA TGCGGAGATC GACGACATCA AGCGGTTTCG CAACGCCAAG AAGCTCGCCG CCTATGCCGG ACTGGTGCCG TCCACCTATT CCTCCGGCGG CAAGACCTTC CACGGCAAGA TCATCAGGCA GGGCAACAAG TGGCTGCGCT GGGCCTTCGT CGAGGCGGTG GCACCTGCTC TTGCTAGCGA TCCGCAGCTT CGCGCCCAAT ACGAACACTT GAAATCCAGA GGAGTGAACA AAGCGCGGGT TGCCATCGCG CGCAAGCTTT TGACGATCGC CTTCCAGATC CTGCGTGACC AACGCCCATA TGAACGGCGC GGCGGCAGAA GCGAGGATTG CGCGTCGACG ATATCCCGGC TGTCCTGA
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Protein sequence | MQVMIEGQSH LQPFGLPYWG FENLNKGVGS MTASYDYHIG VDYHKSYSHL VVQDSSGKTL RSGRVKNDRQ SLGGFLERYR ENSHAVVEAT RNWMVMYDWL DDICDDVVLA HPLKVKAIAD AKIKTDKIDA TVLTHLLRAD LVPEAWAPGE RARELRVALR ERMFYLRLRT MTKNRIVTVF DRYPEQTAQL KKLGDLFGKA GRAQLAQVKV SEIDRIQIDR GLAFIGDIDG RIKQSEATIR AMTKANTNVK LLKTIPGIGE FFARLIDAEI DDIKRFRNAK KLAAYAGLVP STYSSGGKTF HGKIIRQGNK WLRWAFVEAV APALASDPQL RAQYEHLKSR GVNKARVAIA RKLLTIAFQI LRDQRPYERR GGRSEDCAST ISRLS
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