| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_8312 |
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| Symbol | |
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| ID | 7365263 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011982 |
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| Strand | - |
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| Start bp | 236735 |
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| End bp | 237688 |
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| Gene Length | 954 bp |
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| Protein Length | 317 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 643641868 |
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| Product | ABC transporter membrane spanning protein (oligopeptide) |
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| Protein accession | YP_002540165 |
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| Protein GI | 222080301 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.577715 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTTTGCTT ACGTCGCCAG ACGGCTTGGT ACAGCGCTCA TTATCGTTTT TTGTGTCGCA
ACTGTGGTCT TTTCTGCCCT TCATTTGGTG CCGGGAGATC CGGTCGAATT GTTGCTGTCC
GGCGGAGGAG GCGTTGCACC TCCTCCAGAA GCCGTAGCAG AATTGCGCGA ACAGTTGCAT
CTCGACCGAC CGGTATTCGA ACAATATCTT GGGTTCCTAG AGAGAAGCGC CCGGTTCGAT
CTCGGTCGCT CGTTCCTTGA TAACAGCGAA GTCGCCAGCC AAGTTGCTTC TCGTCTGCCC
CGGACGCTGG AACTCGTCCT GGTCGCACTC GTGCTCGCGC TTTTAATTGG CCTGCCGAGC
GGGACATGGG CAGCCTACAA TCACAACGGC ACTATCGATC GCACCGGACT CGCTATCTCT
TCGTTCTTTC TCTCGGTTCC GGTCTTTGTG ATTGGCGTCG CTCTCATCTA CGCGTTCTCG
CGCAAACTTG GTTGGTTCCC GTCAGGTGGC TTTGTCCCCA TCACCGATAA CGTTCTGCAG
CATTTTCAAA ACCTATTCCT TCCTGCGCTT TCAATCGCGC TTGGATTGAG CGCAATATTC
TTCCGCATGA TCCGAACTAC CGTGCTCGAA ACGATGCGGC GTGATTGGGT ACGGACCGCC
CAGGCGAAAG GCGTTCGCCC GAGCCGGATT GTAAGGATGC ATGTTGTCAG GAACGCGCTC
GGGCCGGTCG TCACTCTCGT CGGCCTCAAT GCCGGCCACA TGCTCGGCGG AACCGTCCTC
GTCGAATACA TCTTCAACTA TCCCGGCCTG TCTTCCCTTC TCGTGCAGGC CGTCGAACAA
CGCGACTATC CGATTGTGCA AGGCGTTGTG CTGACCATTT CTGTCTGTTT CGTCCTTATC
AATCTGGCTG TCGACATCAT CTACGGCTCC CTTAACCCGA GGATCCGTGG ATGA
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| Protein sequence | MFAYVARRLG TALIIVFCVA TVVFSALHLV PGDPVELLLS GGGGVAPPPE AVAELREQLH
LDRPVFEQYL GFLERSARFD LGRSFLDNSE VASQVASRLP RTLELVLVAL VLALLIGLPS
GTWAAYNHNG TIDRTGLAIS SFFLSVPVFV IGVALIYAFS RKLGWFPSGG FVPITDNVLQ
HFQNLFLPAL SIALGLSAIF FRMIRTTVLE TMRRDWVRTA QAKGVRPSRI VRMHVVRNAL
GPVVTLVGLN AGHMLGGTVL VEYIFNYPGL SSLLVQAVEQ RDYPIVQGVV LTISVCFVLI
NLAVDIIYGS LNPRIRG
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