Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_8275 |
Symbol | |
ID | 7365234 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011982 |
Strand | + |
Start bp | 205056 |
End bp | 206207 |
Gene Length | 1152 bp |
Protein Length | 383 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 643641844 |
Product | ATP-dependent DNA ligase |
Protein accession | YP_002540141 |
Protein GI | 222080277 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG3285] Predicted eukaryotic-type DNA primase |
TIGRFAM ID | [TIGR02776] DNA ligase D [TIGR02778] DNA polymerase LigD, polymerase domain |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0118926 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | CTGTTCAACA ACATCCGTGT CGATTTCGAC CCGGCCATCG TCGATGTAGA CGCTCAAACG GCTGATGGGC AAGTGCGCCA GGCTGCGTTC AAGGGGCTGC GAGAGGATAA GCCCGCAAAA GAAGTCGAGG CCGAGAAGCC GGCAGAACCT GCCGAAGTCG ATACGCCCGA CCCGGAAACT GCTCGCAAGC CGGCCCCGAC GCCGACGACA TCTTCCCGTC TTCGCAAGGG TGCAAAGGTC GACGTCATGG GCGTCCTGGT CTCCAGCCCG GACAAGGAGT TGTGGCCTGA CGCACTTGAT GGCGAACCCG TAACGAAAGT GGACCTCGCT CACTATTATG AGGCAGTCGG GCCTTGGCTC ATCGATCATA TCAAGGGCCG GCCGTGCTCA ATCATTCGCA CGCCTGACGG TATTGGCGGG GAGCAGTTCT TCCAAAGGCA TGCGATGCAG GGGACATCAA ACCTGATCGA ACAGGTGAAA GTCTCAGGCG ACAAGCAGCC GTACCTCCAG ATCGGCCGCG TCGAGGGTTT GGCCGCGATC GCACAGATCG GCGGCGCCGA GCTACATCCG TGGAACTGCG AACCCTATCA GCCTGAAGTC CCCGGTCGTC TCGTCTTCGA TCTGGACCCA GGCCCGGATG TCGACTTCGC GACAGTGGTA GAAGGTGCAC GAGAAATCAG GGATCGGCTT GAAGAGCTGG GTCTGGTCAG CTTCTGCAAG ACGACGGGCG GCAAAGGGCT CCATGTTGTA ACGCCGCTCG CTGTTCCGAA GGGCAAGAAG CTGAGCTGGG ACGAAGGCAA GGCTTTCGCG CACGACGTGT GTCTGCAGAT GGCCCGCGAC AATCCCGAGC TTTACCTGAC CAAGATGTCC AAGGCGCAGC GTGAAGGCCG TATCTTCCTG GATTATCTGA GAAACGACCG CACCTCGACG GCGGTGGCTC CCCTGTCGCC CCGTGCCCGG CCGGGAGCAA CCGTCTCGAT GCCCTTGAAC TGGGCTCAAG TAAAAAAAGG TCTCGATCCG AAGCGGTTCA CAATTCGCAC GGTGCCTGGA CTTCTGAAGG ATAATACGGC GTGGCAGGAC TATTGCGATG GTCAAAGGCC GCTAGAGCAG GCGATCAAGC GCTTGGAGAA ACTTATGAGG CGGGCTGCGT GA
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Protein sequence | MFNNIRVDFD PAIVDVDAQT ADGQVRQAAF KGLREDKPAK EVEAEKPAEP AEVDTPDPET ARKPAPTPTT SSRLRKGAKV DVMGVLVSSP DKELWPDALD GEPVTKVDLA HYYEAVGPWL IDHIKGRPCS IIRTPDGIGG EQFFQRHAMQ GTSNLIEQVK VSGDKQPYLQ IGRVEGLAAI AQIGGAELHP WNCEPYQPEV PGRLVFDLDP GPDVDFATVV EGAREIRDRL EELGLVSFCK TTGGKGLHVV TPLAVPKGKK LSWDEGKAFA HDVCLQMARD NPELYLTKMS KAQREGRIFL DYLRNDRTST AVAPLSPRAR PGATVSMPLN WAQVKKGLDP KRFTIRTVPG LLKDNTAWQD YCDGQRPLEQ AIKRLEKLMR RAA
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