Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_8149 |
Symbol | |
ID | 7365064 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011982 |
Strand | + |
Start bp | 101950 |
End bp | 102750 |
Gene Length | 801 bp |
Protein Length | 266 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 643641766 |
Product | ABC transporter |
Protein accession | YP_002540063 |
Protein GI | 222080200 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1177] ABC-type spermidine/putrescine transport system, permease component II |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.828592 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAACGCTG ATCAACCCGG TGTTGGCTGG CCGCTAAAAA TCTTCACGGC GCTGGTCTAC ATGTTTCTCT TTGGACCCGT CGCCGCGGTG ATCCTGCTTT CGTTCAACAC CGCCGACTTT GCTTCCTTCC CCATGCAAGG GGTCGGGCTC CGCTGGTTCG CCGAGCTTTT TCAGAACGAG AGTGTCATGC GGGCGCTCAA GACGTCGCTG GTGCTCGGTG TTTTGACCGC CGGCATCTGT GGTGTGGTGG GAGTATTGGC CGCCATTGCG CTTGCCCGAT ATGAATTTCG AGGTAAGCGG CTCATGAACG TCTTTCTGCT GACACCGCTT CTCGTTCCCG AGACGGTTCT CGCCGTGGGG CTTCTGTTGT TCATGCAGTT GTTCAAGCAG CCGCGCAGTT TTAGCCTACT GTTGATGGGC CACATCATGC TGGCGCTGCC CTATGTGGTT CTGGTCGTTC ATGCGCGCCT CATCACAATC CAGAAGACCT TTGAGGAAGC GGCTGCGACG CTGGGTGCCA ACCGGTTGCA GGTTTTCCGC GAAGTCACCC TTCCGCTGCT CATGCCAGCA GTTGTCGCAG GGTTGCTGTT GTCATTCACC CTGTCGTTCG ACAACGTCAC CGCCTCGATC TTTTGGCGGC CGATCGGCAC GGAAACGCTT CCCACTGAAA TCTACAGCAT GCTCCGGGAC TCGGTGAGCC CTGAGATCAA TGCGCTGGGA ACGGTGATGG TCGCGATCAC GATCGGGCTG CCGCTGCTGG GTATCGCCTT CTTCCGAATC AGGTCGCAAA GGCGGCTTTA G
|
Protein sequence | MNADQPGVGW PLKIFTALVY MFLFGPVAAV ILLSFNTADF ASFPMQGVGL RWFAELFQNE SVMRALKTSL VLGVLTAGIC GVVGVLAAIA LARYEFRGKR LMNVFLLTPL LVPETVLAVG LLLFMQLFKQ PRSFSLLLMG HIMLALPYVV LVVHARLITI QKTFEEAAAT LGANRLQVFR EVTLPLLMPA VVAGLLLSFT LSFDNVTASI FWRPIGTETL PTEIYSMLRD SVSPEINALG TVMVAITIGL PLLGIAFFRI RSQRRL
|
| |