| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_8131 |
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| Symbol | traA |
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| ID | 7365050 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011982 |
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| Strand | + |
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| Start bp | 87030 |
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| End bp | 90332 |
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| Gene Length | 3303 bp |
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| Protein Length | 1100 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 643641753 |
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| Product | Dtr system oriT relaxase |
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| Protein accession | YP_002540050 |
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| Protein GI | 222080187 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
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| TIGRFAM ID | [TIGR02768] Ti-type conjugative transfer relaxase TraA |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGCCATCG CCCATTTCTC AGCCAGTATC GTCAGCCGTG GCGACGGCCG CAGTGTCGTG
CTGTCTGCTG CCTACCGGCA CTGCGCGAAG ATGGAATACG AGCGTGAAGC CAGCACCATC
GACTACACGC GCAAGCAGGG TTTGCTGCAT GAGGAGTTCA TGCTTCCTGC CGATGCCCCG
AAATGGGCGA AAGCGCTCAT TGCGGATCGC TCTGTTTCCG GCGCCGTCGA AGCCTTCTGG
AACAAGGTCG AGGCTTTCGA AAAACGCTCC GACGCGCAGC TGGCCCGCGA CCTGACGATT
GCACTGCCGC TGGAGCTTAC ACCCGAGCAG AACATCGCCC TGGTCCGTGA TTTCGTGGAG
AAACATATCC TGGGGAAGGG CATGGTCGCC GACTGGGTCT ATCACGACAA TCCCGGCAAT
CCGCACATCC ACCTGATGAC CACATTGCGG CCGCTGACCG AGGACGGATT CGGGGCCAAG
AAGGTAGCGG TCATTGGTGA GGACGGCCAG CTGGTTCGCA CGAAATCCGG CAAAATCCTC
TACGAACTCT GGGCCGGTTC GACGGACGAT TTCAACGCCC TGCGCGACGG CTGGTTCGAA
CGGCTGAACC ACCATCTGGC CCTCGGCGGC ATCGATCTCA GGATCGATGG CCGTTCCTAC
AAAAAGCAGG CCATCGAGCT CGAGCCGACC ATTCATCTAG GCGTAGGCGC CAAGGCAATC
GCGCGGAAAG CGGAACAACA GGGTGTTCGG CCGGAGCTCG AAAGGATCGA ACTGAACGAA
GAACGCCGCT CGGAAAACAC CCGCCGCATC CTCAAAAATC CAGCCATCGT GCTCGACCTG
ATCATGCGGG AAAAGAGCGT CTTCGATGAA CGCGATGTCG CGAAAGTGCT GCACCGCTAT
GTCGACGATC CCGCCGTCTT CCAGCAGCTG ATGTTGCGCA TCATCCTGAA TCCGGAGGTG
CTACGGCTGC AGCGCGACAC GATCGAGTTC GCGACCGGAG AGAAAGTGCC GGCGCGCTAT
TCGACACGGG CGATGATCCG GCTGGAAGCG ACGATGGCGC GACAGGCGAT GTGGCTGTCG
GACAAGGAAA CGCATGCCGT TTCCACGGTG GTGCTCGCAG CGACGTTTGG GCGGCATGGG
CGGCTGTCGG AGGAACAGAA AGCAGCCATC GAGTGCATCG CCGGTCCGGC CCGCATCGCC
GCGGTCGTCG GACGCGCGGG TGCTGGTAAG ACCACGATGA TGAAGGCGGC GCGGGAGGCG
TGGGAGCTGG CCGGATATCG TGTCGTCGGT GGCGCGCTCG CCGGCAAAGC GGCGGAAGGT
CTGGAGAAGG AAGCCGGCAT CGAGAGCCGC ACGCTCTCCT CCTGGGAGCT GCGCTGGAAC
CGCGGTCGTG ACGTGCTCGA CAATAAAACC GTCTTCGTCA TGGACGAGGC CGGCATGGTG
GCCTCGAAAC AGATGGCGGG CTTTGTCGAT GCCGTCGTCA GGGCAGGGGC AAAGATCGTG
CTAGTCGGCG ATCCCGAGCA GCTTCAGCCG ATCGAAGCGG GGGCCGCTTT CCGCGCCATT
GTCGATCGGA TTGGTTACGC TGAACTCGAA ACGATCTATC GCCAGCGCGA GGACTGGATG
CGCAAGGCGT CCCTCGATCT CGCCCGCGGC AATGTCGAAA AGGCGCTGAC CGCCTACAAT
TCAAATGCCA GAATTACCGG CGAGCGTCTG AAGGCGGAAG CGGTTGAGCG CCTGATCGCT
GACTGGAACC ACGATTACGA TCAGACGAAG ACGACGCTGA TCCTCGCGCA TCTGCGCCGC
GACGTGCGCA TGCTGAACGT CATGGCCCGC GAAAAACTCG TTGAACGCGG ACTTGTCGGT
GAGGGCCATG TCTTCAAAAC GGCTGACGGT ATCCGCCAGT TCGACACGGG CGACCAGATC
GTCTTCCTGA AGAACGAGAC GTCGCTCGGC GTCAAGAACG GCATGATCGG CCATGTGGTC
GAGGCCGCGC CAAACCGCAT CGTCGCCGTG ACCGGCGAAG GCGAGCATCG CCGGCATGTC
GTGGTCGAAC AACACTTCTA CAGCAATCTC GATCACGGCT ATGCAACGAC CATCCACAAG
TCCCAGGGCG CCACCGTCGA CCGGATGAAA GTGCTGGCAT CGCTGTCGCT GGATCGCCAT
CTGACCTATG TGGCGATGAC CCGTCATCGT GAGGATCTGC AACTCTATTA CGGACAGCGA
TCCTTCGCCT TCAATGGTGG CTTGGCAAAG GTTCTTTCCC GGAGGAATGC CAAGGAAACC
ACCCTCGATT ACGAGCGCGG AAAATTGTAT CGCGAGGCGC TGCGCTTCGC TGAAAACCGT
GGCCTGCACA TCGTTCAGGT GGCGCAAACA TTGCTGCGCG ACCGGCTCGA CTGGACGCTA
CGGCAGAAGG CGAAGCTTGC CGATCTTGCG GAGCGCCTTG GCGCCTTCGC CGAGCGTCTC
GGCCTCAATC AATCCCTGAA AGCCCAAACG GTGAAGGAGG CCGCGCCCAT GGTCGCAGGC
ATCAAGACAT TCTCCGGTTC CGTGGCCGAC ACGGTCGGGG ACAGGCTCGG CGCCGAGCCC
GCCCTGAGGC AGCAATGGGA GGAAGTCTCG GCGCGCTTCC GCTATGTTTT CGCCGATCCG
GAGACCGCAT TCCGCTCGAT GAACTTCGAC GCGGTCCTCG CCGACAGGCA AGCAGCAAAA
CAGATCCTGC AGAAACTCGA AGCCGAGCCG ACGTCTATCG GGCCTCTGAA GGGTAAGACC
GGCATCCTAG CCAGCAAGGC AGAACGAGAG GACCGCCGTA TCGCCGAAGT CAATGTTCCG
GCCCTGAAGC GGGACCTCGA GCAATATCTT CGCATGCGGG AAACTGCTGC GCAGCGGCTG
CAGACGGAAG AGCAGGTTAT GCGCCAGCGC GTTTCGATCG ATATTCCGGC CCTGTCGCCG
GAGGCGCGTG TCGTGCTGGA GCGGGTACGC GATGCAATCG ACCGCAACGA TCTGCCGGCG
GCGATGGCCT ATGCGCTCAG CAACCGCGAG ACCAAGCTTG AGATCGACGG CTTTAACCAG
GATGTCACCG AGCGGTTCGG TGAGCGGGTG CTGTTGAGCA ACGCCGCGCG TGAGCCCTCC
GGAAAGCTGT ACGAAAAGCT TGCCGAGGGG ATGAAACCCG AGCAGAAGGA GCAACTGAAG
CAAGCCTGGC CGGTCATGCG GACAGCGCAG CAGCTCGCCG CCCACGAGCG CACCGTCCAG
TCGCTGAAAC TGGCCGAGGA GCAACGTCTC ACCCAGCGCC AGACGCCGGT GCTGAAGCAA
TGA
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| Protein sequence | MAIAHFSASI VSRGDGRSVV LSAAYRHCAK MEYEREASTI DYTRKQGLLH EEFMLPADAP
KWAKALIADR SVSGAVEAFW NKVEAFEKRS DAQLARDLTI ALPLELTPEQ NIALVRDFVE
KHILGKGMVA DWVYHDNPGN PHIHLMTTLR PLTEDGFGAK KVAVIGEDGQ LVRTKSGKIL
YELWAGSTDD FNALRDGWFE RLNHHLALGG IDLRIDGRSY KKQAIELEPT IHLGVGAKAI
ARKAEQQGVR PELERIELNE ERRSENTRRI LKNPAIVLDL IMREKSVFDE RDVAKVLHRY
VDDPAVFQQL MLRIILNPEV LRLQRDTIEF ATGEKVPARY STRAMIRLEA TMARQAMWLS
DKETHAVSTV VLAATFGRHG RLSEEQKAAI ECIAGPARIA AVVGRAGAGK TTMMKAAREA
WELAGYRVVG GALAGKAAEG LEKEAGIESR TLSSWELRWN RGRDVLDNKT VFVMDEAGMV
ASKQMAGFVD AVVRAGAKIV LVGDPEQLQP IEAGAAFRAI VDRIGYAELE TIYRQREDWM
RKASLDLARG NVEKALTAYN SNARITGERL KAEAVERLIA DWNHDYDQTK TTLILAHLRR
DVRMLNVMAR EKLVERGLVG EGHVFKTADG IRQFDTGDQI VFLKNETSLG VKNGMIGHVV
EAAPNRIVAV TGEGEHRRHV VVEQHFYSNL DHGYATTIHK SQGATVDRMK VLASLSLDRH
LTYVAMTRHR EDLQLYYGQR SFAFNGGLAK VLSRRNAKET TLDYERGKLY REALRFAENR
GLHIVQVAQT LLRDRLDWTL RQKAKLADLA ERLGAFAERL GLNQSLKAQT VKEAAPMVAG
IKTFSGSVAD TVGDRLGAEP ALRQQWEEVS ARFRYVFADP ETAFRSMNFD AVLADRQAAK
QILQKLEAEP TSIGPLKGKT GILASKAERE DRRIAEVNVP ALKRDLEQYL RMRETAAQRL
QTEEQVMRQR VSIDIPALSP EARVVLERVR DAIDRNDLPA AMAYALSNRE TKLEIDGFNQ
DVTERFGERV LLSNAAREPS GKLYEKLAEG MKPEQKEQLK QAWPVMRTAQ QLAAHERTVQ
SLKLAEEQRL TQRQTPVLKQ
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