Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_8016 |
Symbol | |
ID | 7365146 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011982 |
Strand | + |
Start bp | 14709 |
End bp | 15530 |
Gene Length | 822 bp |
Protein Length | 273 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 643641698 |
Product | Ku protein |
Protein accession | YP_002539995 |
Protein GI | 222080132 |
COG category | [S] Function unknown |
COG ID | [COG1273] Uncharacterized conserved protein |
TIGRFAM ID | [TIGR02772] Ku protein, prokaryotic |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0632763 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCACCGC GTCGTCCCTA TTGGAGAGGT TACCTCAAGC TTTCGCTCGT CACTTGCCCT GTGGCCATGA CCCCGGCGAC CTCTGAATCG GAAAAGGTTC GCTTCCACAC GCTCAATAAG GACACAGGCA ATCGTGTCGT CTCGCACTAT GTCGACAGCG TCACCGGAAA ACCCGTGAAG GACGAGCAAG AGGCCAAGGG CTACGAGCGT GGCGAGAACG ACTACGTACT TCTGACAGAC GAGGACCTGG AGTCCGTCGA GCTGGAGACG GTCCGCACGA TCGATATCGA GAAATTCATC CCACGCGGAA GCATCGAATG GGTTTACTTG GAAACGCCCT TCTATCTTAC GGCTAACGAC AAGATCGGCG ACGAGGCTTT TGCGGTCATC CGACAAGCCA TGGAGGCCGA GGACGTCGTC GGCGTATCTC GCGTTGTCCT GGGTCGCCGC GAGCGGGCGG TTGTGCTTGA ACCACGCGGC GAAGGCATCG TCGTCTGGAC GCTACGCTTT GGCGATGAAG TCCGGCCGGA AAGCGAGTAT TTTACCGGCA TCGAGAAAAA GTCGGATGCA AAGGGCGTGT CGGCCGTCGA GGCAGTTATC AAAAAGCGCA TGCAGGACTG GTCACCGGAG ATGGTGTCCG ATCCTATTCA AGAAAGCTTG CTGAAGCTCA TCGCCGATAA GAAGAAGGCA AAGAAACCGA GCAAAGCGAA GGCTTCGAAA TCCACAAAGG GCGACGACGA GGAAAAGAGC AACGTCGTCA ACATCATGGA TGCCTTGAAA AAGTCGGTTG CCAAAGAACT CAAATCCCGC AAAGCCGGAT GA
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Protein sequence | MAPRRPYWRG YLKLSLVTCP VAMTPATSES EKVRFHTLNK DTGNRVVSHY VDSVTGKPVK DEQEAKGYER GENDYVLLTD EDLESVELET VRTIDIEKFI PRGSIEWVYL ETPFYLTAND KIGDEAFAVI RQAMEAEDVV GVSRVVLGRR ERAVVLEPRG EGIVVWTLRF GDEVRPESEY FTGIEKKSDA KGVSAVEAVI KKRMQDWSPE MVSDPIQESL LKLIADKKKA KKPSKAKASK STKGDDEEKS NVVNIMDALK KSVAKELKSR KAG
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