Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_7364 |
Symbol | |
ID | 7380406 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011981 |
Strand | + |
Start bp | 339924 |
End bp | 340874 |
Gene Length | 951 bp |
Protein Length | 316 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 643641434 |
Product | ABC transporter substrate binding protein |
Protein accession | YP_002539731 |
Protein GI | 222102692 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.180283 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGACTGGT CGCAGCTGGA AGCAAAGTTC GGCCCCTTTC CGAAGCTTCC CGACGGCACC AAGGCGGGCG CCGTCTCAAA GACACTGACC AACGAATACT GGCGGTCGCT CGGTGAGGGC TATGCCGCGT TCGGCAAGGC CAAGAACGTT CCGGTCGCCT ATCAGGCGGC GCAAAGCGAA GGCGACCAGC TTGGTCAGTT GACGATTGCC GAGGGGATGA TCACCCAAGG CTATAACGTT CTGCTGGTGT CGCCACAGAC GGATTCCAAT CTCCAACCGG TGATCGAACA GGCCAAGGCC GCCAATATTC CGGTCGTTGA CGTCAATGAT GCCGTGATCC CGCAGGCCGA GCACTATGTC GGCAATGTTC AGCGCGACAA CGGCGTGCGC GTCGCCAAAT GGTTCATCAC CAACCGTCCG CAGGGTGGCA AGGTGGCGAT CATCGAGGGC CAGGCCGGTG TTTATGCCGC CGTGCAACGC ACCGACGGCT TTAAATCCAC CATCGGTGAA AACGGCAGTT TCAAGATCGT CGCCAGCGTT CCCGGCAATT GGGACCGCCA GACCTCCTAC GATGCCGCGA CCAACATCCT CAACCAACAC CCCGATCTTA TCGGCTTCTA TGCCAACAAT GACGGCATGG CATTGGGCGT GGTCGAAGCC GTCAAGGCGG CAGGGCTTGC GGGCAAGGTC GCTGTCTTCG GCACTGACGG TATTTCAGAC GCCTACGCCT CGATCAAGGC AGGCGAACTG ACCGGCACCG TCGATAGCTT TCCGGTTCTA ACAGGTGAAG TCGCCCTTGA AACAGCCCTT CGGCTCGTTG CCGGCCAGAA ATTGCCGCGC GTTGTCGCAA CGCCTCAGGC GCTGATCACC GCCGACAACC TCGCCCGCTA CCAAGGCAAG GGCGTCGATG TGCGCGCCGT GCTGATGGAA GATGCCAAGG CTGCAAAATA A
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Protein sequence | MDWSQLEAKF GPFPKLPDGT KAGAVSKTLT NEYWRSLGEG YAAFGKAKNV PVAYQAAQSE GDQLGQLTIA EGMITQGYNV LLVSPQTDSN LQPVIEQAKA ANIPVVDVND AVIPQAEHYV GNVQRDNGVR VAKWFITNRP QGGKVAIIEG QAGVYAAVQR TDGFKSTIGE NGSFKIVASV PGNWDRQTSY DAATNILNQH PDLIGFYANN DGMALGVVEA VKAAGLAGKV AVFGTDGISD AYASIKAGEL TGTVDSFPVL TGEVALETAL RLVAGQKLPR VVATPQALIT ADNLARYQGK GVDVRAVLME DAKAAK
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