| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7224 |
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| Symbol | nocT |
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| ID | 7380378 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011981 |
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| Strand | + |
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| Start bp | 190715 |
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| End bp | 191488 |
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| Gene Length | 774 bp |
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| Protein Length | 257 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 643641325 |
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| Product | ABC transporter substrate binding protein (nopaline) |
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| Protein accession | YP_002539622 |
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| Protein GI | 222102583 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAACTGC TTAAATCTCT TGCCACCGTA GCATTGCTGC AGGCTGCTTT ACTCTTGCCC
GCTCATGCAG GTGAAAATCT CGCAACCATC AAATCGGCTG GCGTGTTCAA GATCGGTACC
GAGGGCACTT ATGCGCCATT CACCTATCAC AATGAGAGTG GCAAGCTGGT TGGTTTTGAC
GTGGAAATCG GAGAAGCCAT TGCCGCCAAA CTTGGTGTTA AAGCCGAGTT CGTGGAAGGA
AAATGGGATG GATTGATCGC CGGTCTCGAT GCGAAGCGCT ATGATACCGT GATCAATCAA
GTGGGCATTA CCGAGACGCG CAAACAGAAA TATGATTTTT CGGACCCCTA TATCGCCTCA
AAAGCCGTTC TGATCGTCCG CAGTGATGAC AATAATATCA AGGACTTTGC TGATCTGAAG
GGCAAAAAAT CGGCGCAATC TCTCAGCAGC AATTTTGGAA AGCTCGCTGA AAAGTCGGGT
GCGGAACTGG TTGGTACCGA TGGGTTTGAT CAGTCCATTC AACTCGTGCT GACGCGTCGT
GCCGATGCCA CGATCAATGA CAGCCTGTCT TTCCTCGACT TCAAGAAGCA CAAGCCAGAT
GCGCCGGTGA AGGTCGTCGC CCAGCAGAGC GATGCCGATT ATTCCGGCGT GATCATTCGC
AAGCAGGAGC CCGAATTGCT GACCGCCATC AACAAGGCGC TGGCTGACAT CAAAGCCGAT
GGCACTTATC AGAAGATTTC TGAGAAGTAT TTCGGTCAAG ACGTCTCCAA ATAG
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| Protein sequence | MKLLKSLATV ALLQAALLLP AHAGENLATI KSAGVFKIGT EGTYAPFTYH NESGKLVGFD
VEIGEAIAAK LGVKAEFVEG KWDGLIAGLD AKRYDTVINQ VGITETRKQK YDFSDPYIAS
KAVLIVRSDD NNIKDFADLK GKKSAQSLSS NFGKLAEKSG AELVGTDGFD QSIQLVLTRR
ADATINDSLS FLDFKKHKPD APVKVVAQQS DADYSGVIIR KQEPELLTAI NKALADIKAD
GTYQKISEKY FGQDVSK
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