| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_6279 |
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| Symbol | |
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| ID | 7381318 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 1272566 |
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| End bp | 1273690 |
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| Gene Length | 1125 bp |
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| Protein Length | 374 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643649740 |
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| Product | ABC transporter nucleotide binding/ATPase protein (spermidine/putrescine) |
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| Protein accession | YP_002547964 |
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| Protein GI | 222107173 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG3842] ABC-type spermidine/putrescine transport systems, ATPase components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCATGTAA AGCAGCGGTC ATCAAGGGAT CGCAGCATGA AACAAGCCGC CGCCATCGAT
ATTGCCGCCG TTACCAAGGT TTACGGCCAT ACGACAGCCG TCCACAGCAT CAGCCTGAAA
ATTCCAGCTG GCACCTATTG CTGCCTACTC GGCCCTTCCG GTTGCGGTAA GACATCGACG
TTACGGATGA TTGCCGGACA CGAGACCGTC ACAACAGGTG ATATCCTGCT GGGCAACACC
AACATCACCG ATCTCGCGCC CGCCGCGCGC GGCACAGCGA TGATGTTCCA GTCCTACGCG
TTGTTTCCGC ATCTCGACCT CACCGAAAAT GTCGCCTTCA GCCTGAAAAT GAAGGGCATC
GACAAAGCCA CCCGCAGCGC CAAGGCGATG GAGATGCTGC AATTGATGCA ACTGGAGGCC
TATGCGGACC GCCGCCCCGC CCAGCTTTCC GGCGGACAGC AGCAGCGTGT GGCGCTGGCA
CGCGCGTTGA TTACCGATCC GGAAGCGCTT CTTCTGGACG AGCCTTTGTC CGCACTCGAT
CCGTTTTTGA AAATCCGCAT GCGGGCCGAA CTGAAGAAGC TCCAGACCTC GCTTGGCATC
ACCTTCGTGC ATGTGACCCA TAGCCAGGAA GAGGCCATGG CGCTCGCCGA CCTGATCGTT
ATCATGAACG ATGGCCGCAT CGAACAGGCT GCCGATCCCC GCACCGTATT CGAGCGCCCG
GCCTCAGCAT TCGTCGCTCG TTTCATGGGC GATCACAATG TCATTTCAGG CCGAGTCACG
AGCGTTTCCG ATGAGATCGC GATGATATCA GTCGCAGGCG GGGCGGATTT CGCAGCTTCC
GGCAAAGCCG CCATCGGCGA ACCCGCCGAC ATAGCGGTGC GCACTGACCA TGTGCGGATT
GGCCAGAGCC AGGTCCCGGG CCTCGGATTC ACCGGCTCTG TCACCAATGT CGAATATCGA
GGTTCCACCG TGAAGCTGAT GCTGAGCGGT GCGGGCATTG AAGACTTTAC CGCCATCCTG
ACCGATGCCG CCTTCCACGC ACATCCGGTC AAGGTAGGCG AAGCCATTGC CGTTTGCTGG
GAGGCCGATG ACGCCATTGT TCTCGGCAAA CCGGCGCTGA AATAA
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| Protein sequence | MHVKQRSSRD RSMKQAAAID IAAVTKVYGH TTAVHSISLK IPAGTYCCLL GPSGCGKTST
LRMIAGHETV TTGDILLGNT NITDLAPAAR GTAMMFQSYA LFPHLDLTEN VAFSLKMKGI
DKATRSAKAM EMLQLMQLEA YADRRPAQLS GGQQQRVALA RALITDPEAL LLDEPLSALD
PFLKIRMRAE LKKLQTSLGI TFVHVTHSQE EAMALADLIV IMNDGRIEQA ADPRTVFERP
ASAFVARFMG DHNVISGRVT SVSDEIAMIS VAGGADFAAS GKAAIGEPAD IAVRTDHVRI
GQSQVPGLGF TGSVTNVEYR GSTVKLMLSG AGIEDFTAIL TDAAFHAHPV KVGEAIAVCW
EADDAIVLGK PALK
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