Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_6250 |
Symbol | |
ID | 7381291 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011988 |
Strand | + |
Start bp | 1240838 |
End bp | 1241614 |
Gene Length | 777 bp |
Protein Length | 258 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 643649713 |
Product | short chain dehydrogenase |
Protein accession | YP_002547937 |
Protein GI | 222107146 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.230305 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCGAAAT CCGTGGCCGT GGTAACAGGT GCCGCCGGTG ATATCGGGCG GGCAATTGCC AGCCGTCTGG CCGCAAGCCA TGATGTGGTG GTGCTGGCCG ATATTGATGA GACCGCGGTG AATGCGGCTG CGAAAACCCT CGGCAGTACG GAAAACTTCC TGCCGCTGGT CTGTGACGTC ACCGACGAGG CGAGCATCAA TGCTCTGGCA TCTGCGGTGC AGGAGTTTGG GGTTACCAAG ACCCTCGTCA ACAACGCCGG GGCGGCAAGG GCCGTCAGTC TGCACGATAC CGATGCTGCC ATCTGGCGCC AGGATAATAC GCTCAATCTG GAAGCCGCAT TCCTGACCTT CAGGGCTTTG GAAAATCAAC TGAAACAATC ACAAGGCGCG GTCATCAATA TTGCTTCGGT CAATGGCATG GCCGTGTTCG GCCATCCCGC CTATAGCGCT GCGAAGGCTG GCCTGATCCA TCTGACCCGG TTGATCGCGG TGGAATATGG GAAATTCGGC ATTCGTGCCA ATGCGGTGGC GCCCGGCACG GTGCGCACCC AGGCCTGGGA AGCGCGCGCC GCTGCCAATC CTGCCGTGTT CGAAGAGGCC AAGCGTTGGT ATGCCTTACA ACGGATCGCC ACGGCGCAGG ATGTTGCAAA TGCGGTGTTT TTTCTGGCTG GTGATCAGGC TGCTGCCATT ACCGGCGTCT GCCTTCCCGT CGATTGTGGG TTGACGGCAG GCCAAAGCGA ACTTGCCCGG ACATTTTCGC AGTCCGAGCA TTATTGA
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Protein sequence | MAKSVAVVTG AAGDIGRAIA SRLAASHDVV VLADIDETAV NAAAKTLGST ENFLPLVCDV TDEASINALA SAVQEFGVTK TLVNNAGAAR AVSLHDTDAA IWRQDNTLNL EAAFLTFRAL ENQLKQSQGA VINIASVNGM AVFGHPAYSA AKAGLIHLTR LIAVEYGKFG IRANAVAPGT VRTQAWEARA AANPAVFEEA KRWYALQRIA TAQDVANAVF FLAGDQAAAI TGVCLPVDCG LTAGQSELAR TFSQSEHY
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