| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_6118 |
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| Symbol | pcaJ |
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| ID | 7380769 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 1140541 |
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| End bp | 1141230 |
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| Gene Length | 690 bp |
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| Protein Length | 229 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643649612 |
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| Product | 3-oxoadipate CoA-transferase subunit B |
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| Protein accession | YP_002547837 |
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| Protein GI | 222107046 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG2057] Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit |
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| TIGRFAM ID | [TIGR02428] 3-oxoacid CoA-transferase, B subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACAATAG ACACCCGCGA AGACATCAAG CTCTCCAACG CCCAGATCGC CTGGCGCGCC
GCTCAGGATA TTGCCGATGG CGCCTATGTC AATCTCGGCA TCGGCTTCCC CGAAATGGTG
GCGCAATACC AGCCGCCGGG CCGTCAGGCG ATTTTCCACA CGGAAAACGG CATCCTGAAT
TTCGGCGAAG CCCCGCCGGA AGGCGAGGAA GACTGGGACC TGATCAACGC AGGCAAAAAG
GCGGTTACGC TGAAACCGGG CGCTGCGTTT TTCCACCATG CCGACAGCTT TGCCATGGTG
CGCGGCGGCC ATCTGGATGT CGCCATTCTC GGTGCCTATC AGGTCGCGCA AAATGGTGAT
CTCGCCAATT GGCGTGTTGG CTCCAAAGGC GTGCCTGCCG TGGGCGGTGC CATGGATCTG
GTGCATGGCG CAAAACAGGT TTTCGTCATC ACCGAACATG TCAGCAAGAA GGGTGAGTTC
AAGCTTTTGG ACAAATGCAC CTTCCCGTTG ACCGGCGTCG GCTGCATTAC CCGTGTCTAT
ACCAGCCATG CCGTGATCGA TATCGCCAAG GGTCACTTCG TGGTGCGTGA AATGCTCGCC
GCCATGACGC TGGACGAATT GCAGGCAATG ACTGGCGCAA AGCTACACGT GGATGGGCCG
ATTGTCGATC TCACTGTACC CGCGCTTTGA
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| Protein sequence | MTIDTREDIK LSNAQIAWRA AQDIADGAYV NLGIGFPEMV AQYQPPGRQA IFHTENGILN
FGEAPPEGEE DWDLINAGKK AVTLKPGAAF FHHADSFAMV RGGHLDVAIL GAYQVAQNGD
LANWRVGSKG VPAVGGAMDL VHGAKQVFVI TEHVSKKGEF KLLDKCTFPL TGVGCITRVY
TSHAVIDIAK GHFVVREMLA AMTLDELQAM TGAKLHVDGP IVDLTVPAL
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