| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_6059 |
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| Symbol | secD |
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| ID | 7380882 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 1077785 |
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| End bp | 1080304 |
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| Gene Length | 2520 bp |
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| Protein Length | 839 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643649559 |
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| Product | bifunctional preprotein translocase subunit SecD/SecF |
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| Protein accession | YP_002547784 |
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| Protein GI | 222106993 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0341] Preprotein translocase subunit SecF
[COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAACCT CTCCCTGGCT TGTGGCCACC TATGTGGTCA TCATCGCCTT TGGCATCCTA
ACGGCACTGC CGAATATTTT GTCGCCAAAC ACGCTCAATA GCTTTCCCTC CTGGTTCCCG
AAGGACAAGG TCGCACTTGG CCTTGACCTG CGCGGCGGCT CTCATCTGGT GCTTGAGGTC
GATAGCGCCG ATCTGGTGCA GGAAAGACTG CAAAGCCTGA TCCAGGATTC GCGCCGTGCG
CTGCGCGACG ATGGCGTTGA TGCCGCGACA GTGCGCAAAA GTGGCTCGTC GCTGGTCGTG
ACCCTTCAGT CGGCGGAGCA AAGAGCCGCA GCCTTGACCG CCTTGGGCAA GCTTGCCCAT
CCGGTCGGTC TGACGGGCGC GCCTGATCTG GCATTTACGG GTGAGGGCGC CACCATATCC
ATTACACTTG CCGAGGCCGG AATTACCGAC CGTGCCAATG CCGGAGTGGA ACAGAGCCTG
GAAATCATCC GCCAGCGTAT CGACCAGGTT GGTGTTGCCG AACCAACGAT CCAGCGCATC
GGTGGCGATC GTATTCTTGT GCAGCTTCCG GGTACGCAGG ACCCGGCGCG CATTCGTGAA
CTTCTGGGCT CTACCGCCAA GATGAGCTTT CATATGCTGT CGGAAAATGC CACGGATGGC
GCAGCCGTAC CGCGCGGCGT CACCATGCTG AAGGACGATG AGGGCCGCAC CTATCCGGTT
GATGACCGGG TGGAACTGGC AGGCGACCGC TTGACCGATG CCCGTGTTGG TTTCGATCCG
AATACCAATG AACCGCTGGT CAGTTTCCGT TTCGATACGG CGGGTGCGGC GCGCTTTGCT
GAAATCACCC GCGCCAATGT TGGCAAGCCT TTTGCCATTG TTCTGGACGA CAAGGTTCTG
TCTGCCCCTG TCATCCGTGA GCCGATTACT GGTGGTTCCG GCCAGATTTC CGGGAATTTC
ACGGTGGAAA GCGCAACGGA CCTTGCTGCA TTGCTGCGCG CCGGGGCGTT GCCCGTCAAG
CTCACGGTCA TTGAAGAGCG GACGGTTGGT GCTGACCTGG GCGCGGACGC CATCAAGATG
GGTGTCTATA CCGGCTTGAT CGGCTTTGCG CTGGTCGTCG GATTTATGAT CGTGCTGTAT
GGTGGATGGG GAATAGTCGC CAATCTGGCC CTCGGTCTCA ATGTCATCCT GACCTTCGCC
TGCCTGTCGC TGATCGGGGC GACGCTGACG CTGCCGGGTA TCGCGGGTAT TGTGCTCGGC
ATTGGCCTTG CGGTTGACGC CAACGTTCTG ATTAATGAGC GGATTCGGGA AGAAACCCGC
AAGGGCCGTG GTGCCATGGC GGCACTGGAT GCCGGTTTCC GCCGGGCCTA TTCCACCATT
ATCGATAGTA ATGTGACGGC GTTGATCGCC ACCCTGCTGC TGTTCTGGTT CGGCTCTGGC
CCTGTTCGCG GTTTTGCCAT CACCATGGGT CTGGGCATTG CCATATCGAT GTTCACAGCG
GTTTCGGTGG TGCGTGTCGT CATGCTCGCC ATAATCAGGC GTTACAAGCT GAAGCGTCTC
GATATCAAGC CGCTGCTTCC CCTCCAGTTG ATCCCTGATG GAACACGCAT TCGTTTCATG
CGGGCGCGCT TCGTTGGCAT CGGCATTTCT GCGTTCCTTT CGATTGCCTC TCTTATCCTG
TTCGTCACGC CCGGCTTGAA CTATGGCGTC GATTTTCGTG GTGGTATCCA GCTTGAAGTG
GTGACCCAGG ATCGCGCCGA TCTCGCTGCC TTCCGCTCAG GCTTGGATGG GCTTGGGCTT
GGCGATGTCA CGCTTCAGGA ATTTGGCGAT GCTCGCCACC TGCTGGTTCG CGTCGAGCGG
CAGCCGGGTG GTGAAGAAGC GCAGACCGCG GCGGTGGAGC GGCTGAGAAC CGAGGTAAAG
GTTATCGATG CAACGGCGTC GGTAGAGCGT ACCGAAGTTG TTGGCCCGAA GGTGTCGGGA
GAACTGGCGA CCGCGGGTAT CCTCTCGGTT GTCCTCGCCA GCCTGGCCAT GCTGGGCTAT
ATCTGGGCGC GTTTCGAGTG GCCTTTTGCG GTTGGCGCAA TTGCGACACT CATTCTCGAC
GTCACCAAGA CGATTGGCTT CTTCGCGCTC ACCGGGCTTG ATTTCAACCT GACGGCCATC
GCGGCGCTGC TGACCCTGGT CGGCTATTCC GTCAACGACA AGGTCGTGGT CTATGACCGG
ATGCGGGAGA ATATGCGGCT TTACAAGACG ATGCCGCTGC GTGAACTGAT CGATCTGTCG
ATCAACGAAA CGTTGGCCCG CAGCCTGTAT ACATCGGCCA CTGCCTTTCT TTCGCTGTTG
CCCATGGCCA TCTGGGGCGG TAGCGCGGTT GAGAGCTTTG CCGTGCCGAT GATTTTCGGC
ATTGCCATTG CGGCCTCATC GTCGGTGTTT ATTGCCGCAC CGATCCTGCT GTTCTTAGGC
GATTGGCGTC GCAAGCGGGC GGCCGCTCCA GAAAAGCCAG CCGGTTCCGT CGAGGCTTGA
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| Protein sequence | MKTSPWLVAT YVVIIAFGIL TALPNILSPN TLNSFPSWFP KDKVALGLDL RGGSHLVLEV
DSADLVQERL QSLIQDSRRA LRDDGVDAAT VRKSGSSLVV TLQSAEQRAA ALTALGKLAH
PVGLTGAPDL AFTGEGATIS ITLAEAGITD RANAGVEQSL EIIRQRIDQV GVAEPTIQRI
GGDRILVQLP GTQDPARIRE LLGSTAKMSF HMLSENATDG AAVPRGVTML KDDEGRTYPV
DDRVELAGDR LTDARVGFDP NTNEPLVSFR FDTAGAARFA EITRANVGKP FAIVLDDKVL
SAPVIREPIT GGSGQISGNF TVESATDLAA LLRAGALPVK LTVIEERTVG ADLGADAIKM
GVYTGLIGFA LVVGFMIVLY GGWGIVANLA LGLNVILTFA CLSLIGATLT LPGIAGIVLG
IGLAVDANVL INERIREETR KGRGAMAALD AGFRRAYSTI IDSNVTALIA TLLLFWFGSG
PVRGFAITMG LGIAISMFTA VSVVRVVMLA IIRRYKLKRL DIKPLLPLQL IPDGTRIRFM
RARFVGIGIS AFLSIASLIL FVTPGLNYGV DFRGGIQLEV VTQDRADLAA FRSGLDGLGL
GDVTLQEFGD ARHLLVRVER QPGGEEAQTA AVERLRTEVK VIDATASVER TEVVGPKVSG
ELATAGILSV VLASLAMLGY IWARFEWPFA VGAIATLILD VTKTIGFFAL TGLDFNLTAI
AALLTLVGYS VNDKVVVYDR MRENMRLYKT MPLRELIDLS INETLARSLY TSATAFLSLL
PMAIWGGSAV ESFAVPMIFG IAIAASSSVF IAAPILLFLG DWRRKRAAAP EKPAGSVEA
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