Gene Avi_6026 details

Gene Information

• Locus tag: Avi_6026
• Symbol: efp
• ID: 7380853
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011988
• Strand: +
• Start bp: 1034266
• End bp: 1034835
• Gene Length: 570 bp
• Protein Length: 189 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 643649528
• Product: elongation factor P
• Protein accession: YP_002547759
• Protein GI: 222106968
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0231] Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A)
• TIGRFAM ID: [TIGR00038] translation elongation factor P

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.524609
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGTCAAGG TCATCGCCTC TTCGGTCCGC AAGGGCAATG TTCTCGAAGT CGACGGCAAG 
CTCTATGTCG TGCTTACCGC GCAAAACTTC CATCCCGGCA AAGGCACGCC GGTGACCCAG 
ATCGACATGC GCCGCATCGT TGACGGTGTG AAAGTGTCGG AACGCTGGCG CACGACCGAG 
CAGGTGGAGC GCGCTTTCGT TGAAGACGTC AACCACCAGT TCCTCTACGA GGATGGTGAA 
GGCTTCCACT TCATGAACCC GGAAAACTAC GACCAGATCG TCGTAGATGT CGAGACCATG 
GGTGACCAGA AGGCCTATCT CCAGGAAGGC ATGACCTGCG TTATCTCGAT GTATGAAGGT 
GTTGCGCTGG CGCTTGACCT GCCACGCCAC GTGACCCTGG AAATCATGGA GACCGAACCG 
GTCGTCAAAG GCCAGACGGC GTCTTCGTCC TATAAGCCTG CGATGCTTTC CAACGGCATC 
CGCACCCTCG TACCGCCGCA TATCAATGCC GGAACCCGCG TGGTGATTGC CACTGAAGAC 
AATTCCTATG TTGAGCGTGC CAAGGACTGA 

 

Protein sequence

MVKVIASSVR KGNVLEVDGK LYVVLTAQNF HPGKGTPVTQ IDMRRIVDGV KVSERWRTTE 
QVERAFVEDV NHQFLYEDGE GFHFMNPENY DQIVVDVETM GDQKAYLQEG MTCVISMYEG 
VALALDLPRH VTLEIMETEP VVKGQTASSS YKPAMLSNGI RTLVPPHINA GTRVVIATED 
NSYVERAKD