| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_6018 |
|---|
| Symbol | |
|---|
| ID | 7380845 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | + |
|---|
| Start bp | 1024016 |
|---|
| End bp | 1025926 |
|---|
| Gene Length | 1911 bp |
|---|
| Protein Length | 636 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 643649520 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002547751 |
|---|
| Protein GI | 222106960 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGCGA TAACCGAGCG GGTTGGCCCG GCATCTGGCC AGCGGCTTCA GCCGCACCAG
CATGCTGTGG CCCAGCCGGT CAGCTTTGCT GGCACCTTCG GGCTCTATCA GCCGGCGGAG
GGTGCCAAAC AGGGTGTGGT GCGCAAATGC GCGGTGCTGT TTCTCCAGCC CTGGGGCTTT
GAGGAAATGT GTACGCACAA GCTGTTCCGC ATCATTGCGG AAGAACTGGC GTGCGAGGGC
ATCGCCAGTC TGCGCTTCGA CTATCCCGGC ACGGGCGACG CGCTGGATCC GCCGGACCGC
AGTCGTGGCC TGTCGCTCTG GCAGGATACG ATACGCTTGG CCCTTGACGT GCTTGCCCAA
AAGACTGGTG GCCTGCCGGT GATTTTGCTG GGGCACGGGC TGGGCGCATC GCTTGGCGTG
GGCATGGCGG CTGACCTCGA GGGCCTGGCG GGATTTGTCG CCATGGCACC CGTGGCCTCC
GGCCGCGCCT ATCTGAGGGA ATTGCAGTTC TGGGCGCGGG TCATCGATGA CGGATTGGGC
CTGGCCGAAC ATTTGCGCCT CAGCGGGATG ACGGCCATTG CCGGGCACGT GATGCCGGAT
GCAAAGGCCT CGGCCTTGAA GAATACCGAT TTTTCCGCCG TGCAGCCGCA TCGCTCCATC
CCGCATCTGT TCGTCAACCG GGCGGATCGG CCCGGCGACG GGCAAATGGC AAAGCAGATT
GAAGCGAAAG GCGCCCGCGT CGAGACCATC GACTATCCGG GCTATGATGC CATGGTCGGC
AATCCTGCCA TGGCCCGAAT GCCCATGGTG GCGGCTGAAC ATGTCATCAG CTGGATCGTT
CGCCGGGCGG CAGCGCTTGG CGAGCAGAAG CGTCCGTTGG CTATCGATCC TTCAGCAGTA
TCCGTACAGG ACGAAGATCA GGCGCACCTG GATGGCGGGG ATTTTCGCGA GACGGCCCTT
CGGTTTGGCC GGGGCAAACG GCTTTACGGT ATTTTGTGCG AGCCGACTGG ACCCCGCAGT
GGCGCAAGCG TTCTGTTGCT CAACACTGCG TATGACCGCA GTGCGGGATG GGGACGCTCG
GGTGTCGCCA TGGCGCGCAA GCTTGCAGGC GACGGTATTG CCTCCCTCCG CTTCGATGTT
GCCAATGTCG GCGATAGCCC GCCGGTGCCG GGCCTGCCGG ATCAGGTGCT TTACGCCGAA
ACCCAATATG ACGATGTGGA AGCCGCGCTT GCCGTTCTCG AAGAGCGTTC ACTGCTGCCC
AGTGTGGTGG CCGGACGGTG CAGTGGCGGT TATCTCGGGT TTTCCTGCAT GACCAAGGAT
CACCGCATTG CCGGAGCCTG CCTGGTCAAT CCCTTCGTCT TCTATTGGGA TAAGAGACGG
CGGGTGGAAG ATGGGCTAGC CGTGGTGCCG CGTTCGCTCG ATACCTACAA GCATCGGCTG
TTTCAGATGC AAACCTTGCG ACGTCTCTGG CGGGGGAAGG TGGATGTGAA GAACGCGACC
CGCAATTTCG CTCTGGTTGG CGTGCGTCGT GTGTTGAACC GCCTTGGCCT CGCCCAGGTC
TTCAGCCGCG ATGTCCGGCT GGAACATCGG GCCGTGCGCG TTGCCTTTGC CGCTCTCGCA
AAGCGAAAAA CGCCGCTGGT GCTGCTCTAT AGCGAGCAAG ACGTTGGTCT TGACCATTTC
TATCAGCATT TCGGCTCGCA GGGCCGCAAG TTGGAACGCT ATCCCAATGT CCGCACCGAC
ATTCTGGCGG AGACGGATCA TAATTTTTCT CCCGCCGCTG CCCAGCAGCG CTATTTCGAG
GAAATCAAGG CGCTGGCACT GGCGGTCCAG GCGTCGAAAT TGCCTGCCCA GCAGATCAAA
GCCGGTTTAT CCGCAGGCAA AGAACCCGTC TCAGAACCGG AAGCGTCGTG A
|
|---|
| Protein sequence | MEAITERVGP ASGQRLQPHQ HAVAQPVSFA GTFGLYQPAE GAKQGVVRKC AVLFLQPWGF
EEMCTHKLFR IIAEELACEG IASLRFDYPG TGDALDPPDR SRGLSLWQDT IRLALDVLAQ
KTGGLPVILL GHGLGASLGV GMAADLEGLA GFVAMAPVAS GRAYLRELQF WARVIDDGLG
LAEHLRLSGM TAIAGHVMPD AKASALKNTD FSAVQPHRSI PHLFVNRADR PGDGQMAKQI
EAKGARVETI DYPGYDAMVG NPAMARMPMV AAEHVISWIV RRAAALGEQK RPLAIDPSAV
SVQDEDQAHL DGGDFRETAL RFGRGKRLYG ILCEPTGPRS GASVLLLNTA YDRSAGWGRS
GVAMARKLAG DGIASLRFDV ANVGDSPPVP GLPDQVLYAE TQYDDVEAAL AVLEERSLLP
SVVAGRCSGG YLGFSCMTKD HRIAGACLVN PFVFYWDKRR RVEDGLAVVP RSLDTYKHRL
FQMQTLRRLW RGKVDVKNAT RNFALVGVRR VLNRLGLAQV FSRDVRLEHR AVRVAFAALA
KRKTPLVLLY SEQDVGLDHF YQHFGSQGRK LERYPNVRTD ILAETDHNFS PAAAQQRYFE
EIKALALAVQ ASKLPAQQIK AGLSAGKEPV SEPEAS
|
|---|
| |