| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5975 |
|---|
| Symbol | |
|---|
| ID | 7381058 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | - |
|---|
| Start bp | 989849 |
|---|
| End bp | 990616 |
|---|
| Gene Length | 768 bp |
|---|
| Protein Length | 255 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 643649486 |
|---|
| Product | NAD/NADP dependent oxidoreductase |
|---|
| Protein accession | YP_002547717 |
|---|
| Protein GI | 222106926 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAGACA GACTGAAGGG AAAAATCGCC ATCATTTCCG GTGGTGCGAC CGGCATGGGC
GGGGCGGCCT CGCGGCTGTT TGCAGCGGAA GGCGCTGCCG TCGCCATCAT CGACCGCAAT
GGCGCGGAGG CCGAACAGAC GGTCAAGGAT ATTCGTGATT CTGGCGGCAT AGCCGATTTC
TGGGTGGCCG ATGTCTCGGA AGAAGACGCC GTTCAGGCCG CCGTCAAGGG TGTCGAGGAC
CGGTTCGGGG CTGTCACCGT GTTGTTCAAT CACGCCGGCA CCATCGTCAT CAAGCCATTC
CTGGAAACCA CGCTGAAGGA ATGGGACTGG CTGCATGCGG TCAATGTCCG CTCGATGTTT
CTGATGACCC GGGCCGTTTT GCCCGGCATG ATTGCCGCGG GTGGTGGCTC CATCGTCTGC
ACCTCCTCGA TATCAGCCGT AGCAGCGACG CCGATGGAAG TGCTCTATGA CACCACCAAG
GGCGCAGTCC ATATGTTTGC CCGCGCCATC GGCGTGGAAT TCCGCGACCG GAACATTCGC
TGCAACGCCG TCTGCCCCGG CTTTATCCGC ACGCCGCATG GACTTCGGGA ATTGACCGAC
CTTCAAGCGC TGGGTGTCGA TGTCTCGGAT GCCGCCATCA TCGCCCAACA GGGCCGGATC
GGCGAACCGG AAGACGTGGC CCGCGCAGCC CTTTATCTGG CCAGCGACGA ATCCCGCTTC
GTCAATGGTG CCCATCTGTT CGTGGATAAC GGCTTTACGG CGATTTGA
|
|---|
| Protein sequence | MTDRLKGKIA IISGGATGMG GAASRLFAAE GAAVAIIDRN GAEAEQTVKD IRDSGGIADF
WVADVSEEDA VQAAVKGVED RFGAVTVLFN HAGTIVIKPF LETTLKEWDW LHAVNVRSMF
LMTRAVLPGM IAAGGGSIVC TSSISAVAAT PMEVLYDTTK GAVHMFARAI GVEFRDRNIR
CNAVCPGFIR TPHGLRELTD LQALGVDVSD AAIIAQQGRI GEPEDVARAA LYLASDESRF
VNGAHLFVDN GFTAI
|
|---|
| |