| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5897 |
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| Symbol | nrtA |
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| ID | 7380994 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 909816 |
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| End bp | 911114 |
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| Gene Length | 1299 bp |
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| Protein Length | 432 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643649416 |
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| Product | ABC transporter substrate binding protein (nitrate) |
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| Protein accession | YP_002547653 |
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| Protein GI | 222106862 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.260088 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCCGCA TCGCCCATCA CGCTATCAAT CGCCGTTCCA TTCTCAAGGC AACAGGTGCT
GTTGCCACGC TTGCCGCCGC CCGCATCCTG TTGCCATCAG GCGCGCTGGC CGCCACCGCC
ACACCGGAAG TGACGAGCGC CAAACTTGGC TTCATCGCCC TGACGGATGC CGCACCCTTG
ATCATCGCGC AGGAAAAAGG CCTGTTTGCC AAATATGGGA TGACCGGCGT GGACGTGTCG
AAGCAGGCCT CCTGGGGTGC GACCCGCGAC AACCTGGTGC TGGGCGGCGC ATCCAATGGC
ATTGACGGCG CACATATCCT CACGCCAATG CCCTACCTGA TGCAAACCGG CAAAGTCACG
CAGAACAATG TGCCGGTGCC TATGTCCATC CTTGCACGCC TCAATCTCGA CAGCCAGGGC
ATTTCAGTCG CCAAGGAATA TGCAGAAACC GGCGTCGCCC TTGACGCCGC CAAGCTGAAG
GACGCCTTTG CCGCCAAGAA AGCCAAGACC GGCGAAGTCA AGGTGGCGAT GACCTTTCCG
GGTGGCACCC ATGATCTGTG GATTCGCTAC TGGCTTGCCG CTGGCGGCAT CAATCCCGAC
AAGGACGTCT CAACCATCGT CGTGCCGCCA CCGCAGATGG TCGCCAATAT GAAAGTCGGC
TCCATGGACG CCTTCTGCGT CGGCGAACCC TGGAACGAGC AATTGGTCAA CCAGGGCATC
GGCTTTACCG CCTGTACCAC CGGCGAGCTT TGGAAGGGCC ATCCTGAAAA GGCCTTCTCG
ATGCGCACCG AATGGGTGGA AAAGAACCCC AACGCCACCA AGGCGCTGAT GATGGCGATC
ATGGAAGCGC AAATCTGGTG CGACAGCATG GAAAACAAGG CCGAAATGGC CGATATTCTC
GGCAAGCGCC AATGGTTTAA CGTGCCGCCC AAGGATGTGC TTGGCCGCCT GAAGGGCAAT
ATCAATTACG GCAATGGCCG CGTGGTGGAA AACACCGGCT TGCAGATGAA ATTCTGGCAG
GACCATGCCT CCTACCCGTT CAAGAGCCAT GACCTGTGGT TCCTCACCGA AAATATCCGC
TGGGGCAAGT TTGCCGCCGA TCTCGACATG AATGCACTGG TCGACAAGGT CAACCGTGAA
GACATCTGGC GGGCTGCCGC CAAGGATCTG TCGGTCGCCA GCGCCGATAT TCCGGCATCG
ACCTCGCGCG GCAAGGAAAC CTTCTTTGAC GGCAAGGTCT TCGACCCTGA AAACCCCAAG
GCCTATCTCG ACAGCCTGAC CATCAAGGCT GCGGCGTGA
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| Protein sequence | MTRIAHHAIN RRSILKATGA VATLAAARIL LPSGALAATA TPEVTSAKLG FIALTDAAPL
IIAQEKGLFA KYGMTGVDVS KQASWGATRD NLVLGGASNG IDGAHILTPM PYLMQTGKVT
QNNVPVPMSI LARLNLDSQG ISVAKEYAET GVALDAAKLK DAFAAKKAKT GEVKVAMTFP
GGTHDLWIRY WLAAGGINPD KDVSTIVVPP PQMVANMKVG SMDAFCVGEP WNEQLVNQGI
GFTACTTGEL WKGHPEKAFS MRTEWVEKNP NATKALMMAI MEAQIWCDSM ENKAEMADIL
GKRQWFNVPP KDVLGRLKGN INYGNGRVVE NTGLQMKFWQ DHASYPFKSH DLWFLTENIR
WGKFAADLDM NALVDKVNRE DIWRAAAKDL SVASADIPAS TSRGKETFFD GKVFDPENPK
AYLDSLTIKA AA
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