| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5780 |
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| Symbol | |
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| ID | 7380576 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 806887 |
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| End bp | 807624 |
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| Gene Length | 738 bp |
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| Protein Length | 245 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 643649326 |
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| Product | 16S ribosomal RNA methyltransferase RsmE |
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| Protein accession | YP_002547563 |
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| Protein GI | 222106772 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1385] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR00046] RNA methyltransferase, RsmE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCGAGCAA ATTACAAGAT GCAGAGACTC TATGTCGACG CCGGGCTGGA AGCGGCAAAT
CCAGTGGCGA CGACACCGGA ACAGTATAAC TATCTCGCCA ATGTCCTGCG CCTCACCGAA
GGTGCCGAAG TGCTTGTCTT CAATGGCCGC GATGGCGAAT GGAAGGCCAG CCTTGCCTTT
CCCACCCGCA AACGGATCGC GCTGATCCCG CAGAGCCAAA CCCGCCCTCA GCCCCGCCCG
AGCGACCTGA CATTTCTGTT TGCGCCGCTG AAAGTCGGGC GGATGGACTA TCTCGTCCAG
AAGGCGGTGG AAATGGGCGC CGGTGCCCTC CAGCCAGTGA TGACCCAGCA TGTTCAGGGC
AGGATCGGCA GCATTGAGCG CTTGCAGGCC AATGTGATCG AGGCAGCCGA GCAATGCGGC
ATCCTTTCCG TTCCAAAGGT TGCACCGCTG GTCAAGCTCA AGGACCTGCT GGAAACCTGG
CCTGCCACCC ATCGGATCAT TTTCTGTGAC GAGGACAGCG CCACCGACAA TCCGATGCCA
GCGCTGGCGG CAATCGAGGA ACGGCAACTG GCATTGCTGG TCGGGCCGGA AGGTGGATTT
TCCGATGAGG AACGCAGTCT TTTGCGCAGT CTCGGCTTTG TCACGGCCAT TCCGCTGGGG
CCGCGCATTC TGCGCGCCGA TACCGCAGCC GTTGCGGCTC TGGCCGTGGT TCAGGCCAGC
ATCGGCGATT GGAAATGA
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| Protein sequence | MRANYKMQRL YVDAGLEAAN PVATTPEQYN YLANVLRLTE GAEVLVFNGR DGEWKASLAF
PTRKRIALIP QSQTRPQPRP SDLTFLFAPL KVGRMDYLVQ KAVEMGAGAL QPVMTQHVQG
RIGSIERLQA NVIEAAEQCG ILSVPKVAPL VKLKDLLETW PATHRIIFCD EDSATDNPMP
ALAAIEERQL ALLVGPEGGF SDEERSLLRS LGFVTAIPLG PRILRADTAA VAALAVVQAS
IGDWK
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