| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5759 |
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| Symbol | |
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| ID | 7381639 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 789772 |
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| End bp | 791022 |
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| Gene Length | 1251 bp |
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| Protein Length | 416 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 643649311 |
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| Product | polygalacturonase |
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| Protein accession | YP_002547548 |
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| Protein GI | 222106757 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG5434] Endopolygalacturonase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTCTGCCT CTGGCGGCGG CAGGGTTTCG CTCAAAGCTG GATCGCATCA GGTTGGCGGG
CTGACGCTTC GCTCCGGTGT CGAGCTGCAT CTGGGGGAGG GAGCAGTCTT GCGGCCCGTG
CCGGATTATC AGGCCTATGG CGACAATATC GTCTCGGTCA TTGCCGAAAA ATCCAACCGG
GCCATGCTGG TGGCACGCGG TGCGGACACG ATCGCGCTGA CCGGGTCGGG CCGTATTGAT
GCTGGCGGAG ACGCATTCAT TGCCGGTGAC GATGTCAGTG TCGGCGTATT CATTCCGGCG
GAATTTCGTC CCCGTGTTCT GGTGCTGGAG GGGTGCCGGG GCGTTCGTCT CGACCATATT
AAGGTCGAGA ACTCGCCAAT GTGGACGCTG CATTTCGTCA ATTGTGAGGA TGTCAGCCTC
GCCAATGTGG CGATCCGCAA CAATTGCCGC CTGCCCAATA CCGATGGCAT CGTGCTGGAC
GCCTGCCGCC GGGTGTTGAT TGAGGATTGC ACGATCTCCA CCGCCGATGA TGGTATCTGC
CTGAAAACCA GCGTCGGGCC GGATGGAAAG GCGATTGGCA CCTGCGAGGA TGTGCTGGTG
CGCCGCTGCA CCGTTTCCAG CCAGAGCTGC GCGCTGAAGC TGGGAACTGA AAGTTTCGGC
GATTTCTCCC GCGTGGTGTT TGAGGATTGC CGGGTTGAAC AATCCAACCG GGGCCTGGGG
ATTTTTTCCC GCGATGGCGG AAAGGTCTCC GATGTCAGGT TCTCCCGGAT CAGCCTGGAC
TGCCGGGAGA CGCCGGACGG GTTCTGGGGT TCCGGCGAGG CGCTGACGGT CACGGTGGTG
GACCGGGTGC CGGAGCGCCC GGCGGGTGCG GTGCGAGGAC TTGTTATTGA GGACATCACC
GGGCGGATGG AAGGCACGGT CAACCTCGTC TCCATGGCCG GTGCCGGTAT TCACGATGTG
GCGTTGCATC GGGTGCATCT AGCCCAGCAA ACCGGGGTAC TTGGCACCGC GTTGCGCTAT
GATATGCGTC CGACCAATGC CGATCTGGCA CCTTCGCCCG AGGCTCATGG CCGGGCCAAT
GCCTGGACGC GTGGGGCTGA CGGACGCATC GTGGGGCTCA TCGACTATCC GGGCGGAATG
CCGGGCGTGT TTGCCCTTGG GGTGGACGGG CTGACTATAG ACGATCTCGT TATCGACAGG
CCGCAGCCCC TGCCGGAGGG CTGGAACCCG CTGGATTTCG TCCAACAGTA A
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| Protein sequence | MSASGGGRVS LKAGSHQVGG LTLRSGVELH LGEGAVLRPV PDYQAYGDNI VSVIAEKSNR
AMLVARGADT IALTGSGRID AGGDAFIAGD DVSVGVFIPA EFRPRVLVLE GCRGVRLDHI
KVENSPMWTL HFVNCEDVSL ANVAIRNNCR LPNTDGIVLD ACRRVLIEDC TISTADDGIC
LKTSVGPDGK AIGTCEDVLV RRCTVSSQSC ALKLGTESFG DFSRVVFEDC RVEQSNRGLG
IFSRDGGKVS DVRFSRISLD CRETPDGFWG SGEALTVTVV DRVPERPAGA VRGLVIEDIT
GRMEGTVNLV SMAGAGIHDV ALHRVHLAQQ TGVLGTALRY DMRPTNADLA PSPEAHGRAN
AWTRGADGRI VGLIDYPGGM PGVFALGVDG LTIDDLVIDR PQPLPEGWNP LDFVQQ
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