| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5698 |
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| Symbol | |
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| ID | 7381586 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 722328 |
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| End bp | 723491 |
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| Gene Length | 1164 bp |
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| Protein Length | 387 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643649258 |
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| Product | ABC transporter membrane spanning protein (oligopeptide) |
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| Protein accession | YP_002547495 |
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| Protein GI | 222106704 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.040975 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGTAA CATCTTCCCC CCTGCCCCAA GCCACGACAG GCGCTGGCAC GCCGAACGAA
CCCTTGCTGG ACAATCAGAC GACCGGCGAC CGCATGGTGG TCTCCTCGCA ATGGGCGTTG
ATGTGGTTCA AGTTCCGCCG CCACAAGCTG GCAATGATCG GTCTGATCGC CACGGCGGCG
ATCTATTTCC TGGCGATTTT CGCAGAGTTC CTGTCGCCAA CCCTGCCGAC AACCTTCAAG
CCGCAATATA CATTCGCGCC GCCGCAGCCG ATCAGCCTGT TTCACGATGG CAAATTCCTG
CCGCATGTGA AGGGCTACAA GAATGTCGTC GATCCCAAAT CTTTCACCCG GGTTTTCCAG
GTGGATGACA ATGCGATCAT CCCCATCGAG TTTTTTGCCC GTGGCGAAAG CTATGACATG
TGGGGCCTGT TCACCACCAA TCTACACTTC ATCGGCCCGC TCGATCATAC CAAGCCTTTC
TATATTCTGG GTGCCGACCG GCTTGGCCGC GATCTCTTGT CGCGCGTCAT CTATGGCACA
CGGATTTCCA TGTCGATTGG CCTGATCGGT GTGTTTCTCA GCCTGGTGAT CGGCCTGGTC
CTGGGCGGCA TCTCCGGCTA TTTCGGCGGG ATCATCGATA GCGTCATCCA GCGCACCATC
GAGTTTATCC GCTCCATTCC GACCATTCCG CTATGGCTGG GGCTGGCCGC CGCCATGCCC
AAGGACTGGT CGTCGCTCAA GGTCTATTTC GTCATCCTGG TCATTCTCTC GCTAATCGGC
TGGACAGAAA TGGCGCGGGT GGTACGAGGT CGTTTCCTGT CCTTGCGCAC CGAGGATTTC
GTCACCGCCG CACGGCTGGA CGGCGCCAGC GAAATGCGGG TGATCGGACG TCATATGATG
CCGTCCTTCA CCAGCCACAT CATCGCCGCC GTGACACTGG CAATCCCGAC GATGATATTG
GCGGAGACCT CGCTAAGCTT CCTAGGCCTT GGCCTGCAAC CGCCCATCGT CAGCTGGGGC
GTGCTGCTTC AGGATGCCCA AAACCTGCGG GCGCTGACCC AGGCACCGTG GCTATTGGCA
CCCGGTGTGG CGGTGGTGGT CGCAGTCCTC AGCCTGAACT TCCTTGGCGA CGGCCTGCGC
GATGCAGCCG ATCCCTATGC ATGA
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| Protein sequence | MSVTSSPLPQ ATTGAGTPNE PLLDNQTTGD RMVVSSQWAL MWFKFRRHKL AMIGLIATAA
IYFLAIFAEF LSPTLPTTFK PQYTFAPPQP ISLFHDGKFL PHVKGYKNVV DPKSFTRVFQ
VDDNAIIPIE FFARGESYDM WGLFTTNLHF IGPLDHTKPF YILGADRLGR DLLSRVIYGT
RISMSIGLIG VFLSLVIGLV LGGISGYFGG IIDSVIQRTI EFIRSIPTIP LWLGLAAAMP
KDWSSLKVYF VILVILSLIG WTEMARVVRG RFLSLRTEDF VTAARLDGAS EMRVIGRHMM
PSFTSHIIAA VTLAIPTMIL AETSLSFLGL GLQPPIVSWG VLLQDAQNLR ALTQAPWLLA
PGVAVVVAVL SLNFLGDGLR DAADPYA
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