| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5690 |
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| Symbol | |
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| ID | 7381579 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 714627 |
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| End bp | 715508 |
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| Gene Length | 882 bp |
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| Protein Length | 293 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643649251 |
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| Product | HlyD family secretion protein |
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| Protein accession | YP_002547488 |
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| Protein GI | 222106697 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0642134 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGATGT TGAAATCTCT CGGTAGGGTC GCTGTTACCC TGGTTGTCGT TGTTGCCGCG
CTTTTTGCCG GCTATCACCT CTGGGTCTAT TATATGGAAG AGCCGTGGAC GCGCGACGGG
CGCGTGCGCG CCGATGTCGC CGAGATTGCC CCTGATGTCA CCGGTCCGGT CAGCGAGGTG
CTGGCGAAGG ACAACGCGAC CGTGCGTAAG GGCGATGTTC TGTTCAAGGT CGATGCAAAA
CGGTTCGAAC TGGCTCTGGA GCAGGCGCAG GCCGATCTCG ATCAGGCGAA ATCCTCGCTG
GATGAGGCCG TCCGCGAACG CCAGCGCGAA GAGCGGCTTG GCGATTCCGC TTCGGCCCAG
GCGCGCGACA AGGCGGTGTC TGCCGAAGAG CAGGCCCAGG CTTCCTATAA CAAGGCCCTT
GCCAGCCGCG ATGTTGCCAA GCTGGATCTG GATCGCACCG AAGTCAAATC CACCGTTAAC
GGCACGGTGA GCAATTTCTC TCTTCAGGTC GGTGATTTCG TCAATAGAGG CACGGCTACG
GTGGCTGTCG TCAACACCGA TACCTTGCGG GTCGAGGCCT ATTTCGAGGA AAGCAAATTG
CAGCGCATTC GTGAAGGCGA CCGGGCCTCC GTGCGGATCA TGGGACAAAA AACCGTGCTG
ACTGGCCGGG TGGAAAGCAT GGCGACCGGC ATCCAGGACC GCGAGCGCGA TTCAAGCTCC
GGCCTGCTGG TCAATATCAC CCCGACATTC AACTGGGTCC GGCTGGCGCA GCGCGTGCCT
GTGCGCATTC ATCTCGAAAA TGTCCCAGAG GGTACAAGGC TGATCTCGGG CCTGACGGCC
ACAGTGGACA TCCAACCGGA AGCGCAGGCT GGTCAGAAGT AG
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| Protein sequence | MTMLKSLGRV AVTLVVVVAA LFAGYHLWVY YMEEPWTRDG RVRADVAEIA PDVTGPVSEV
LAKDNATVRK GDVLFKVDAK RFELALEQAQ ADLDQAKSSL DEAVRERQRE ERLGDSASAQ
ARDKAVSAEE QAQASYNKAL ASRDVAKLDL DRTEVKSTVN GTVSNFSLQV GDFVNRGTAT
VAVVNTDTLR VEAYFEESKL QRIREGDRAS VRIMGQKTVL TGRVESMATG IQDRERDSSS
GLLVNITPTF NWVRLAQRVP VRIHLENVPE GTRLISGLTA TVDIQPEAQA GQK
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