Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_5640 |
Symbol | |
ID | 7381114 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011988 |
Strand | + |
Start bp | 665201 |
End bp | 666103 |
Gene Length | 903 bp |
Protein Length | 300 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 643649208 |
Product | transcriptional regulator LysR family |
Protein accession | YP_002547445 |
Protein GI | 222106654 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.203557 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAGATAA AAGCACTGAT CTATTTCGAT GAACTGGTGC GAACCCGCTC GATGCGGGCC GCTGCCGAGC GTCTGAATGT GCAGCCGACC GCCTTTGCCC GACAGATCGA TCAATTGGAG CATTATTTCG GCACGGTGCT GATCGAACGG TCGAGCCGGG GCATCCAGTT GACGGCGGCG GGCGAGCTGC TGGCGGCAAG AGCGGGCAAG ACATTGCGGG AGCTGAACCA TGTTCACCAG TTGATCGACG ATCTCCAGGG CTTGAAGCGC GGCCATGTCA CTATCCACGC AAACGGTGCG ACGGTTGCCA ATTTGCTGGC ACCGGCTCTG GCCGATTTCA GCCTGGTCTA TCCCAATATC CGGTTTTCGG TGACCATTTC CAGCGCTGGT CAGGCGATGG AGGCCTTATC GAGTGCCAAG GCGGACATGG CTGTTACCCT GTTTTCCGAG CCTGATCCGG GCATACGGGT GCGGGCACGG GCGCAGATCG TCTATGATGT CATCGCCGCC AGCCATCATC CGGCAGCGCA CTTGGCGGAA ATGACCGTCA CCGAGCTTGC CCGCTTTCCG CTGGCGGTGC CGGATGGGTC CTTTGGTGCG CGCCGGGCCT TCGATGCCTG GTTTTCCAAG GCCGGTCTGG AGCTTGATCC GGTTTTTGTG ACGGGGTCGC TGGAAATGCA GCGCGAACTC GTGCTGCGCG GCGCGGCCCT GACGTTGCTG CCAGCCCAGA CGGTGGCGCG TGAGCGCCGG TCCGGCGAAC TGGTGGTTAT TCCGGTTGCC GGTGGGGCGG GCATCCGCAC ACCCATCGAT CTTTGCGTCG CCGGTGACCG GCAATTGTCG TTTGCCGCTT CAAAGCTGGT GGATGCAGTT GAGCGGTTCA TGCGCGAGCA GATGGGGAAA TGA
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Protein sequence | MQIKALIYFD ELVRTRSMRA AAERLNVQPT AFARQIDQLE HYFGTVLIER SSRGIQLTAA GELLAARAGK TLRELNHVHQ LIDDLQGLKR GHVTIHANGA TVANLLAPAL ADFSLVYPNI RFSVTISSAG QAMEALSSAK ADMAVTLFSE PDPGIRVRAR AQIVYDVIAA SHHPAAHLAE MTVTELARFP LAVPDGSFGA RRAFDAWFSK AGLELDPVFV TGSLEMQREL VLRGAALTLL PAQTVARERR SGELVVIPVA GGAGIRTPID LCVAGDRQLS FAASKLVDAV ERFMREQMGK
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