| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5540 |
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| Symbol | |
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| ID | 7381452 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 538528 |
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| End bp | 539763 |
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| Gene Length | 1236 bp |
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| Protein Length | 411 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 643649124 |
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| Product | sensory box histidine kinase |
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| Protein accession | YP_002547361 |
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| Protein GI | 222106570 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2202] FOG: PAS/PAC domain
[COG3920] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGCAAGATT GGAAATGCAG GTCCTTTTGC GGTGCTTTCT GCGATGTCAG AACATCAATT
TTATTTTTAA CAGATGGAAC ATATAGGATT TCTTCTCGTT TCGCGTTCCT AACGACAACA
GGAAGTTTTA TGACCGACAG CTCAGCTAGA CGCGGTGCCG AGGCCGCCGG GCGCAGACTT
CTGGCAGAGC ATGCATCGGA AGATCCATTT GCCGCCGCCT TCAAGGCGAC CCGCATGCCG
ATGATCATTA CCGATCCCAG GCAGGCCGAC AATCCGATCA TCTTTGCCAA TAATGCCTTT
TGCGAGCTGA CGGGCTATGC TTCCGACGAT CTGATCGGCA AAAATTGCCG CTTCCTGCAA
GGCCCTGACA GCGACCCGAA AGCTGTGTTG CAGATCCGCA AGGCGATAGA GGCCGAGCGG
GACGTATCGG TCAATATTTT GAACTACCGT AAGGACGGCA CGACGTTCTG GAATGCATTG
TTCATCAGCC CAGTGCGCGA TATCCAGGGC GAAGTGATTT ATTTCTTTGC CTCGCAACTC
GATTTTACCG ATGTCAAAAG CAAGGAAGTG CAGCTGGCCT CGGCAAAATC GCAGGCGGAA
GCAGCGGTCG CCCAGCGTAC GCAGGATCTT GTCGATGCTC TGGAGGCAAA AACCACGCTC
GTCCATGAGG TCGATCACCG CGTCAAGAAC AATCTCCTGA CGATTGCCTC TATCGTCAAG
TTGCAGGCGC GGATGACCAG GGACGATACG GTGCGCCATA CCTTGCGCTC TGTGCTTAAT
CGCGTCGAAG CGCTGAGCAC GGTACAGAGA AAGCTGTTTA CCTCGAGCGA TGTCGGGCGT
TTCGATGTGG CGGATTTTGC CCGCGAACTG GTGATTGACA TTGTCAACGC GCTGAAACGG
GGCGATATCA ATATCACCAT GGATCTTTCC CCGGTCTTTG TTCCCGCCGT GAAAGCGTCG
CCACTGGCGC TGATTGTCAA TGAGCTGATT GGGGATGCGG TGCGCCGCGG CCTGAGCGAT
GGCGGCGGCG AAATCCACCT GACCGTTAAC CGGCCAAACG GTCATTTCGT GATTGAAGTG
CGCGATACCG CTGATCCGGT GCCGGTCAAT AGCGAGGATG ACGACTTCGG GCGCCTGATG
CTGGAAACCT GCATTCGCCA GGTTGATGCC AAACTTGAAC GCAAGACTGA GGGCCGCCAG
ACCATCGTGC GGGTCACCCT GATGGTTGAT AGCTGA
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| Protein sequence | MQDWKCRSFC GAFCDVRTSI LFLTDGTYRI SSRFAFLTTT GSFMTDSSAR RGAEAAGRRL
LAEHASEDPF AAAFKATRMP MIITDPRQAD NPIIFANNAF CELTGYASDD LIGKNCRFLQ
GPDSDPKAVL QIRKAIEAER DVSVNILNYR KDGTTFWNAL FISPVRDIQG EVIYFFASQL
DFTDVKSKEV QLASAKSQAE AAVAQRTQDL VDALEAKTTL VHEVDHRVKN NLLTIASIVK
LQARMTRDDT VRHTLRSVLN RVEALSTVQR KLFTSSDVGR FDVADFAREL VIDIVNALKR
GDINITMDLS PVFVPAVKAS PLALIVNELI GDAVRRGLSD GGGEIHLTVN RPNGHFVIEV
RDTADPVPVN SEDDDFGRLM LETCIRQVDA KLERKTEGRQ TIVRVTLMVD S
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