| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5377 |
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| Symbol | |
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| ID | 7380730 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 377354 |
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| End bp | 379021 |
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| Gene Length | 1668 bp |
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| Protein Length | 555 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643648991 |
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| Product | ABC transporter nucleotide binding/ATPase protein (dipeptide) |
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| Protein accession | YP_002547228 |
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| Protein GI | 222106437 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1123] ATPase components of various ABC-type transport systems, contain duplicated ATPase |
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| TIGRFAM ID | [TIGR02323] phosphonate C-P lyase system protein PhnK |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTGATC CCTTGCTGTG TGTGCAGGAT TTGACCGTTG CCTTCTCCGG CTATGGCCGG
GTGAACCGGG TGTTGCACGA CATCTCTTTC ACCATCGATG CCGGAGAGCG GGTTGCGCTG
ATTGGCGAAA CCGGATCGGG CAAATCCGTG ACATCCAAGG CCATTCTTGG CACGTTGCCA
AACAATGCCA AGGTGGAGGC GGGCTCGATA GCCTATCGCG GGCGGCAGTT GTTGACGCTT
CCATCCGGTG AACGCAACAA GCTGAAAGGC ACTGCCTTTT CCATCATCAT GCAGGACCCG
CTGTCCTCCT TCAATCCGGT GTTTCGCATT GGTCGGCATC TGGAAGACGT GATGCATTAT
GCCGATCGCA ATCAGGGCAT CTATGATACG CCGAAGGGGC GCAAACAGCG GATTTTCGAG
GTGTTGCGCA AGGTGCAATT GGGCGATGTC GAGCGGGTGT TCAACGCCTG GCCGTTTGAG
CTGTCGGGCG GTATGCGCCA AAGGGTGCTG ATTGCGCTGG CGCTTTTGCA TCAACCCGAT
CTGTTGATTG CCGACGAGCC GGGCACGGCA CTGGATGTGA CCACGCAGGA TGAAATCTTG
CGGCTGATCA ATCGGCTGGT GTCGGAAGAC GGTCTGTCGC TGCTGATGAT CACCCACAAT
CTCGGTGTCG TGCGCCAGAC GGCTGACCGG GTGATTGTGA TGCAGCATGG CCGCATTGTC
GAACACGGAC CGTTGAAATC CGTCTTCCAA GCCCCGCAGC AAGCCTATAC GCGTGAGCTG
ATGGCGGCAG TGCCGCCGCT CTATGGCGAA GGTGTAGTGG ATCAGCCGGT CAGCGACAAG
GCTCCGATCA TTACCCTGAG CAATGTGCGT AAACTCTATG CCAAGCGGGC GCTGTTTGGC
CAAAAGCGCG GCCATCTGGC GGTCAACAAC ATCAATCTTC AGGTCAATGA GGGCGAAATT
TTTGGCCTTG CCGGAGAAAG TGGCTCTGGC AAAACCACGC TGGCGCGGAT GATGATGAAC
CTGTTGCAGC CCAGCGATGG CGAGATTGTT GTGCGCGGCA CGCCCAGAGA TGGCGCTTTG
CGCCTCAGCC AGATCGTCTA TCAAAATCCC GGCACATCGC TGAACCCCAA GCGCACGGTG
GAGCAGATTT TGGCTGTGCC GCTGGCCCAT GTGGGCCTTG ATAAAGGCCA GCGCAAAGCG
CGCATGACCG AGCTTTTGGA CCTCGTGCGT CTGCCCGCCA ATTTCGTGTC AAAATATCCG
CATGAGCTTT CCGGCGGGCA AAAGCAGCGG GTGGCCATTG CCCGCGCCTT GGCAGCCAAT
CCGCAGATCA TCATTCTGGA TGAGCCGACA TCGGCGCTGG ATGTCTCGGT GCAGAAAACC
GTGATTGAGC TGCTGTTGGA CCTGCGCGCA AAGCTCGGCC TGACCTATGT GATCATTTCC
CATGATCTGT CTTTGATGCG CAATTTCTGC TCGCGCATTG TCATCATGTA CAAGGGCGAA
ATCGTCGAAC ATGGTACACC TGCCGAAGTG TTCGCGACAG CCCGCCATCC CTATACCCGC
GCCCTCATTG CCGCCATTCC GGTTCTGACC GATGCGCAAG AGGCGTTGAA ACCCACCATT
AGTGAAGAGG AACGAGGCCG CTTTCTGGTG CACGCCACCG GACTGTGA
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| Protein sequence | MADPLLCVQD LTVAFSGYGR VNRVLHDISF TIDAGERVAL IGETGSGKSV TSKAILGTLP
NNAKVEAGSI AYRGRQLLTL PSGERNKLKG TAFSIIMQDP LSSFNPVFRI GRHLEDVMHY
ADRNQGIYDT PKGRKQRIFE VLRKVQLGDV ERVFNAWPFE LSGGMRQRVL IALALLHQPD
LLIADEPGTA LDVTTQDEIL RLINRLVSED GLSLLMITHN LGVVRQTADR VIVMQHGRIV
EHGPLKSVFQ APQQAYTREL MAAVPPLYGE GVVDQPVSDK APIITLSNVR KLYAKRALFG
QKRGHLAVNN INLQVNEGEI FGLAGESGSG KTTLARMMMN LLQPSDGEIV VRGTPRDGAL
RLSQIVYQNP GTSLNPKRTV EQILAVPLAH VGLDKGQRKA RMTELLDLVR LPANFVSKYP
HELSGGQKQR VAIARALAAN PQIIILDEPT SALDVSVQKT VIELLLDLRA KLGLTYVIIS
HDLSLMRNFC SRIVIMYKGE IVEHGTPAEV FATARHPYTR ALIAAIPVLT DAQEALKPTI
SEEERGRFLV HATGL
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