Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_5358 |
Symbol | dppB |
ID | 7380713 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011988 |
Strand | + |
Start bp | 357611 |
End bp | 358558 |
Gene Length | 948 bp |
Protein Length | 315 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 643648974 |
Product | ABC transporter membrane spanning protein (dipeptide) |
Protein accession | YP_002547211 |
Protein GI | 222106420 |
COG category | [E] Amino acid transport and metabolism [P] Inorganic ion transport and metabolism |
COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCCCACTT TCCTTGCCCG GCGCCTGTTG CTGGCCATAC CGACGCTGCT GATCATTTCT GTCTTCGTTT TTTCGCTGCA AAAGCTTCTG CCGGGAGATC CGGTGCTGAT CATGGCGGGA GAAGACCGCG ATCCCGCGGT GATGGAAAGC CTGCGCGAGA AATACCACCT GAATGATCCG ATGCCCGTTC AATATGTAAT GTGGCTTGGC GCCGCGCTGA AGGGTGATCT CGGCATGTCG TTGCGAACCA ACCAGCCCGT GCTGGAACTG ATCGGCGAGA AACTGCCCGT CACCTGCCAA CTGGCCATCA TGTCGATGAT CTTTGCTCTC ACCCTCGGCA TTCCCCTCGG CATTCTGGCC GCGGTCAAGA AGAATACGCT GATCGATTAC CTGGCTAGCG TGGTGGCGCT ATCTGGCCTG TCGATCCCGA ATTTCTGGCT TGGTATCATG CTCATTCTTC TGGTTTCGGT CCGGCTCGGC TGGCTGCCGG CCTCCGGTTA TCAACCATTC TTCTCCGACC CATGGATGTC GATGAAAACC ATGCTGATGC CGTCTTTCGT GCTCGGCAAT GCCTTGGCAG CATCGATCAT GCGCCACACG CGCTCGGCCA TGCTAGGGGT TCTCAGTTCG GATTATGTGC GCACCGCCCG CGCCAAGGGC ATGCCCGAAC GTTCGGTCAT CTTGTCTCAC AGTTTTCGCA ATGCTGTTTT GCCCATCGTC ACCCTGACCG CCTTGCTTTT TGGCGAATTG CTGGCCGGTG CGGTGCTGAC GGAGCAGATT TTCACCATTC CCGGCTTTGG CAAGCTGATC GTCGATGCGG TGTTCAATCG CGACTATGCC GTCGTCCAGG GCGTTGTGCT CTGCACCGCC ATCGGCTTCA TCCTGATGAA CCTGATGGCC GATTGTCTCT ATCTTCTTCT CAATCCTCGG ATGAGGGCCA GCCTATGA
|
Protein sequence | MPTFLARRLL LAIPTLLIIS VFVFSLQKLL PGDPVLIMAG EDRDPAVMES LREKYHLNDP MPVQYVMWLG AALKGDLGMS LRTNQPVLEL IGEKLPVTCQ LAIMSMIFAL TLGIPLGILA AVKKNTLIDY LASVVALSGL SIPNFWLGIM LILLVSVRLG WLPASGYQPF FSDPWMSMKT MLMPSFVLGN ALAASIMRHT RSAMLGVLSS DYVRTARAKG MPERSVILSH SFRNAVLPIV TLTALLFGEL LAGAVLTEQI FTIPGFGKLI VDAVFNRDYA VVQGVVLCTA IGFILMNLMA DCLYLLLNPR MRASL
|
| |