Gene Avi_5356 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_5356 
Symbol 
ID7380711 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011988 
Strand+ 
Start bp355234 
End bp355950 
Gene Length717 bp 
Protein Length238 aa 
Translation table11 
GC content61% 
IMG OID643648972 
Producttranscriptional regulator GntR family 
Protein accessionYP_002547209 
Protein GI222106418 
COG category[K] Transcription 
COG ID[COG2186] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones7 
Plasmid unclonability p-value0.780742 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATTGACG ATCACGACAA TTCCAATCTC GCCCTGAACA AATTGCGTGA ACTGCTGAGC 
TCCGGCCGGT TCAGTGCAGG GGAAAAACTG CCGACGGAGC GGTCATTGTG CGAGGAGCTT 
TGCCTTGGCC GCCGTTCCGT TCGCCGGGCT CTGGAGGTTC TTGAAGCAGA AGGGCTTATC 
TGGCGGCGGC AGGGGTCTGG TACGTTTGCT GGCGCACGCC CCGACGCATT CGATGACTAT 
GTCGGCGCCC TGGTTGCCGG AACCGATCCT TTGGAAGTCA TGGAAGTGCG CCTGCGGCTT 
GAGCCGCAAC TGGCACAGCT GGCGGCCCTG CGGGCCAATG CGACGGATGT GCAGGCCATG 
TATGATCTGG TGGCAAAGAT CGGCGCCAGC AAGGATGCCG ATGGGCGGGA GCTTTGGGAT 
GGGGCGCTGC ATCGAAAGAT TGCCCAATGC GCTGGCAACA GCCTTTTCCT GGCGCTGTTC 
GATGTGATGA ACCGGACGCG GCAGGACCCG GCCTGGCAGA ATATTCGTGA ACAGGCGCGG 
GCGTTTGCTC AAACCCGCCC TGTCACCCAT GGCCAGCATC TCGCCATTAT CGACCGTATT 
GCCTCGCACG ACCCGATCGG AGCGGGCGAA GCCATGCGGG TCCACCTTCT CACCCTGCAA 
GAGAGCCTGA TCCGCATTAC CTCGATCGAT ACCGCCGTCC ACGTCGCAGA GGCATGA
 
Protein sequence
MIDDHDNSNL ALNKLRELLS SGRFSAGEKL PTERSLCEEL CLGRRSVRRA LEVLEAEGLI 
WRRQGSGTFA GARPDAFDDY VGALVAGTDP LEVMEVRLRL EPQLAQLAAL RANATDVQAM 
YDLVAKIGAS KDADGRELWD GALHRKIAQC AGNSLFLALF DVMNRTRQDP AWQNIREQAR 
AFAQTRPVTH GQHLAIIDRI ASHDPIGAGE AMRVHLLTLQ ESLIRITSID TAVHVAEA