Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_5342 |
Symbol | |
ID | 7380700 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011988 |
Strand | + |
Start bp | 342884 |
End bp | 343633 |
Gene Length | 750 bp |
Protein Length | 249 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 643648961 |
Product | ABC transporter |
Protein accession | YP_002547198 |
Protein GI | 222106407 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1129] ABC-type sugar transport system, ATPase component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTGAGTA ATGTCGCCCC CCTTCTCGAA GTTCGTAATT TTTCCCGGTA TTTCGGCGCT GTGAAAGCCC TTGATAATTG CTCGCTGACG GTCGGTGCCG GTGAAGTCGT GGCCTTGGCC GGCGACAATG GCGCCGGAAA GACCACCATG ATCAAGGCGA TCTCCGGGGT CTATTCGCCC ACTTCGGGTG AAATTCTGAT CGATGGCTCC CCGGTTGCCT TTTCCTCGCC GCAGGATGCC CGGGAAAAGG GGATCGAGAC CATTTACCAG GACCTGGCTC TCGCCGATAA TCTGTCCATT GGCGCCAATA TTTTTCTTGG CCGTGAGCCA ATGAAACGCG CTTTTGGTTT TATTCCAGTC CTTGACCGCA AGGCGATGGC CAAGGCCGCA GCCGATACGA TGGCTCTCCT GGACTTCCAT GTGAAGCGAC TGGATGCCCC GGTCAGCAAT TTTTCGGGCG GACAGCGCCA GGCGGTGGCA ATCGGTCGGG CCGTTTACTG GAATGCCAAG ATCCTGATCA TGGACGAACC GACAGCAGCG CTGGGCGTGC CGGAGCAGCG TAAGGTTGTT GCGCTGATCA AATCGCTGAA AGCCCAAGGT CGGGGCGTTA TTTTCATCTC CCATAATTTG CAGGACATAT TCGCGGTATC GGACCGTATC GTTGTCCTGA GACGGGGTGT TGTCGCGGGA ACGCGCAATA TTGCCGATAC CAACCACGAC GAAGTCGTCA AGCTGATGAT TGGTGGGTAA
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Protein sequence | MLSNVAPLLE VRNFSRYFGA VKALDNCSLT VGAGEVVALA GDNGAGKTTM IKAISGVYSP TSGEILIDGS PVAFSSPQDA REKGIETIYQ DLALADNLSI GANIFLGREP MKRAFGFIPV LDRKAMAKAA ADTMALLDFH VKRLDAPVSN FSGGQRQAVA IGRAVYWNAK ILIMDEPTAA LGVPEQRKVV ALIKSLKAQG RGVIFISHNL QDIFAVSDRI VVLRRGVVAG TRNIADTNHD EVVKLMIGG
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