| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5285 |
|---|
| Symbol | potF |
|---|
| ID | 7380653 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | - |
|---|
| Start bp | 285594 |
|---|
| End bp | 286676 |
|---|
| Gene Length | 1083 bp |
|---|
| Protein Length | 360 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 643648915 |
|---|
| Product | ABC transporter substrate binding protein (putrescine) |
|---|
| Protein accession | YP_002547152 |
|---|
| Protein GI | 222106361 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.416451 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGGA CAGGTATCAC ACGGCGTGAC GTGCTGGCGG GAATGGCGGC GGGTGCTGCC
GCAGGAGTGG TTTCAAACGC GGGCATCGCA CGCGCTGCGG TCTCCGACAT GGTCTGGGCA
ACCTGGGACT CCAACGGCCA TCCCGAATAT GTCGCCGCCT TCGAAAAGGA AACCGGCGTC
AAGGTCAAAC TCTCCTATCT CTCCAGCGAA GATGCACAGT TTGCCGCGCT GAAAACCGGG
GCCGCCGCCG ATTGGGACAT GATCAACCCA TCGCTGAACG GCAGCTGGCG CTATATCAAG
GCAGGCCTGC TGAAGGAGCT GGACCTGTCG AAAATTCCCA ATGCCAGCCT GATGTATGAT
GTGTTCAAAT CCACGCCGAA GGTGATGGAT GAGGCCGGCA AGACCTTTGC CATTCCCTAT
CTCTGGGGCC TGAACCCGAT TGTCTACCGC AAGGACAAGT TCGACAAGGA GCCGGACTAT
ACCACGCTCT TCGATGCGAA ATATTCCGGC CAGCTCGCCA TGCGCGATTA CGCCCTGGAA
TCCATCGCCA TCGCCGGGCT GGTTGCCGGT GTGCCGCGTG ACAAAGTGTT CGTGATGGAG
GCCAAGGAAC TGGCCGAGGC GAAGAAACTG CTGATTACCC AGAAGCCGCT GCTGCGCACC
TATTGGCAGA CCATCGGCGA CCTCACCAAT CTCTTCGCCA CAGGCGAAGT GTCCTGCGCC
TTCTCCTGGC GCGTACCTTA TGACGAGCTA CAGGCCAAGC TGCCAATGGG CATGGCCAAG
CCGAAGGCTG GCGTGATGGG CTGGTGCGAT TGCTTCGGCA TGCCTGCCAA TCTTTCACCG
GAAAAGACCG AGATCGGCTA TAAATTCATC AATTATCTGC TTGGACCGAG CTATTCCACC
GATGTGGCAC GGATCGGCCA TTACGCCACC ACCTCCTCCG TCATCAGAGA CAAGCTTTCG
CATGAGGAAC AGGCAACGAT CTTCGTTGAC GATATGGACG TGATGAAATC CTTCATGTGG
CCGGTGGCGC CGCCCAATTA TTCCGACTGG CTGAAAATCT GGAACGAAGT CAAGGCGAGC
TGA
|
|---|
| Protein sequence | MKRTGITRRD VLAGMAAGAA AGVVSNAGIA RAAVSDMVWA TWDSNGHPEY VAAFEKETGV
KVKLSYLSSE DAQFAALKTG AAADWDMINP SLNGSWRYIK AGLLKELDLS KIPNASLMYD
VFKSTPKVMD EAGKTFAIPY LWGLNPIVYR KDKFDKEPDY TTLFDAKYSG QLAMRDYALE
SIAIAGLVAG VPRDKVFVME AKELAEAKKL LITQKPLLRT YWQTIGDLTN LFATGEVSCA
FSWRVPYDEL QAKLPMGMAK PKAGVMGWCD CFGMPANLSP EKTEIGYKFI NYLLGPSYST
DVARIGHYAT TSSVIRDKLS HEEQATIFVD DMDVMKSFMW PVAPPNYSDW LKIWNEVKAS
|
|---|
| |