Gene Avi_5222 details

Gene Information

• Locus tag: Avi_5222
• ID: 7381350
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011988
• Strand: -
• Start bp: 220317
• End bp: 220856
• Gene Length: 540 bp
• Protein Length: 179 aa
• Translation table: 11
• GC content: 52%
• IMG OID: 643648862
• Product: transcriptional regulator
• Protein accession: YP_002547099
• Protein GI: 222106308

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCAGCTCA TTGGTCAAAA AGGCAGCGCT GCTGTCACCA TGCGCGGCAT TGCCACCGCA 
AGCGACATGT CTCTGGCGAC GGTCTATCAT TACTTTCCAA ACAGAACCGC AGTCATCGCG 
ACGCTTTTCG AGCGATATTC AAAGGGAACG CGCGAAGTCA TCGATACGGC TCTTCAGGAT 
ATCAAGGATG CGTCTGGTAT TGGGGATGCT GCCGAAATGA TCGTTGATTT TTACTATAAC 
CGCCTTCGGG GCGATCCAGC CGTGCAGGAC CTGCTGGATG CCATTCATGC CGACAAAGCG 
CTTCATGATC TCGATATCGA GGAAACCCAT AGGCAAGCCG ATCAGTTCAG TCGGAGCACA 
CAGGTCTTTC TGGCGGAAAG TTGCAGGCAG GAATATGCGC GCGCCGTCTA TTTGCTGTTC 
CAGCTCGCCA GCGCTGCAAT TCGTTTGGCT TTGCATGAGA GTGAAGAAAA AGGCGCCGTG 
ATCATTGATG ATTATCGACG TCTTATTCGT GGCCGGTTCA GCCAATTCGA ACAGCTATAA 

 

Protein sequence

MQLIGQKGSA AVTMRGIATA SDMSLATVYH YFPNRTAVIA TLFERYSKGT REVIDTALQD 
IKDASGIGDA AEMIVDFYYN RLRGDPAVQD LLDAIHADKA LHDLDIEETH RQADQFSRST 
QVFLAESCRQ EYARAVYLLF QLASAAIRLA LHESEEKGAV IIDDYRRLIR GRFSQFEQL