Gene Avi_5217 details

Gene Information

• Locus tag: Avi_5217
• ID: 7381346
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011988
• Strand: +
• Start bp: 215384
• End bp: 215833
• Gene Length: 450 bp
• Protein Length: 149 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 643648858
• Product: flavoprotein oxidoreductase
• Protein accession: YP_002547095
• Protein GI: 222106304
• COG category: [R] General function prediction only
• COG ID: [COG1853] Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATGGCCG CAGCCGTAAA AGTGGTCACA ACCAGCGGTC CCGCCGGTCG GGCCGGTTTG 
ACCGTAACCG CCGCCTGTTC GGTATGCCAG GATCCGCCAC GATTGCTGGT CTGCGTGAAC 
GGGACCGCCT CGGCACATCC GTTTTTGCTA CAAAATGCGA GGCTAACGCT GAACATCCTT 
GCCACCGATC AGCAGGAGAT CGCAATGGCT TTTGCTGGCA AGGTCACTCA GGAAAAGCGC 
TTCGACATTG GAGAATGGAC AGAGGATGAA TGTGGGCAAC CATCGCTTCG CGGTGCCTGT 
GCGCATTTCA CCTGTTCTGT GCATGAAACG ATGCAGTCAG GCACGCACAC GATCTTCATC 
TGCAATGTCC ATGTCGCATC CGGTGATAAG GACAAGCTGC CGCTGATCTA TTTCGACCGC 
AACATGATGC CCCTTGCAAA AGTAGCGTGA 

 

Protein sequence

MMAAAVKVVT TSGPAGRAGL TVTAACSVCQ DPPRLLVCVN GTASAHPFLL QNARLTLNIL 
ATDQQEIAMA FAGKVTQEKR FDIGEWTEDE CGQPSLRGAC AHFTCSVHET MQSGTHTIFI 
CNVHVASGDK DKLPLIYFDR NMMPLAKVA