| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5210 |
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| Symbol | petR |
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| ID | 7381340 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 206515 |
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| End bp | 207240 |
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| Gene Length | 726 bp |
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| Protein Length | 241 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643648852 |
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| Product | two component response regulator |
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| Protein accession | YP_002547089 |
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| Protein GI | 222106298 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTCAGATG CGCCCAAGAT CCTGATTGTA GAAGATGACG AGCAGATCGC CGGCATGGTC
CGCGATAGCC TCAACGAGCA AGGAATGCTT GTCGAGGTCG CAGCGGATGG CGCCGCCATG
GACGCCAAGA TGCGCGCACT GGAATTCGAT CTCGTCGTCC TCGATGTGAT GCTGCCTGGA
GAAGACGGGT TTAGCATCTG CCGCCGGCTT CGAGGCAGCG GCGATATTCC CATCCTGATG
TTGACCTCGG TGAGCAGCGA TATCGACCGT GTCGTCGGTC TGGAAATCGG CGCAGACGAC
TATGTCACAA AGCCATTCGT TCTCCGGGAG CTGACGGCAC GGATCAAAGG CCTTCTCAGG
CGCTCCAGAG TGACCTCTCA GCGGCCAGAC AGTTTACGGA AAAGCTTTTT CCGCTTCGAT
GGATGGCAGG TCGATCCGGC TCGGCGGCAG CTTCATGATC CAAGCCATGC GCGCGTTGCG
ATGACGACCC ATGAATTCGA TCTGCTGCTG GCCTTCTGCC AAAATCCTGG ACGGGTGCTG
ACCAGGGAGC AGTTGCTGAG CGCGACCCAT GCGGGCCTGG CAGGCCCGAT CGAACGCAGC
ATTGATGTCC ATATCAGTCG CTTGCGACAG AAGATCGAAA AAGACCCGCG TGATCCAGCG
CTTTTGAAAA CCGTTCGCTT GGGTGGTTAT GTCTTCACTG CCACTGTGGA AGAGGTTCAT
GTTTAG
|
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| Protein sequence | MSDAPKILIV EDDEQIAGMV RDSLNEQGML VEVAADGAAM DAKMRALEFD LVVLDVMLPG
EDGFSICRRL RGSGDIPILM LTSVSSDIDR VVGLEIGADD YVTKPFVLRE LTARIKGLLR
RSRVTSQRPD SLRKSFFRFD GWQVDPARRQ LHDPSHARVA MTTHEFDLLL AFCQNPGRVL
TREQLLSATH AGLAGPIERS IDVHISRLRQ KIEKDPRDPA LLKTVRLGGY VFTATVEEVH
V
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