Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_5184 |
Symbol | |
ID | 7381321 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011988 |
Strand | - |
Start bp | 179017 |
End bp | 180669 |
Gene Length | 1653 bp |
Protein Length | 550 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 643648834 |
Product | ABC-type transporter, substrate binding protein |
Protein accession | YP_002547071 |
Protein GI | 222106280 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.532866 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATCAAAC ATTCCGATTC TATGGCTCTT TCTCGACGCA GGTTGCTGCT TGCCGGTTCT GCAATCCTCT CTGTCGCTCT TGTCGCATCA ACTGGCTTGA AGCCCGCTCA TAGCGCGGGC AACGCGAAAG ACGGCGGCGA TATTACGTTC CTGATCGACT CGTTGGGCAA TACTTGGATA CCCAACAACA GCGCGATCTC CAGCTTTCAG GGGCATGTCT GGGGCCACGT GGCCGACAAG CTCGTCTATG TCGATGCCGA TGGCAAAGTG AGCCCGTGGA TTGCTGAGCG CTGGGACCAG AATGAAGGCG CAACCGAGTT CACCCTCCAT CTCAAGACCG GCGTGACCTT TTCTGACGGC ACGCCACTCG ACGCGGCCGC TGTCGTTGCA AATCTCGATA TCTGGTATGC AGGCCGCAAG AGCGAAGGCA TCAACCCGAT CGGCCTTTTT CCCAAGACCT ACGATCATGC AGAGGCGATT GATCCGTCCA CGGTGAAAGT CGTCTTCAAA AAGCCGACGC TCGGCTTCAT TCCAACCCTC GGCTATCACG GCTCGATCCT GATTTCCCCC AAGACCATCA GCCAACCGGC GACCCAGCAG GCAGATCTCG GCAAGACCTC TGGCAGCGGC CCTTATGTGG TTGAATCCTG GAAGGAAGGC GATTTCGTCA AACTGGTGAA GCGCAAGGAT TACAATTGGG GACCGGCAGC TGTGGGCCAT ACCGGACCAG CGTTTCTGGA TAGCATCACC TACAAGCTGG TCTCCGAACC ATCGCTTCGG GTTGCGGCAG TTCAATCCGG GCAGGCCGAT ATTGCCTATA ATGCCTCGCC CCAGGAGTTG AAGTCGCTCA AGGACGAGGG CTTTACCGTT GCCACGCCGC GTTATCTCGG GTTCGTCAAT GGCTGGGCGG TGAATACCAA GCTCGAGCCC TATAACGATG TCAGGGTGCG CCAAGCCCTT CAGTCTGGCA TCGATCGCCA GGAAATCATC GATACGGTCT ATACATCGGA TTGGAAGCTG GCGACCTCGT TCATCCAGAG CAATGTGCCG GGCGCAACCG ACCAGAGCAC GCTTTTGGCC TACGACTCCG CGAGGGCGGA AAAGCTGCTG GATGACGCAG GCTGGACGAA AGGCGCCGAC GGCATCCGCG CCAAGGATGG AAAGCCGCTT CTGCTGACGC TTTACTCCAA CCCCTATCTT GCCACGTCGA AGGCGGTGGA TGAACTGATC GCCCAACAGC TCGGCAAGAT CGGCTGGAAG GTCAATATCC GCACCTATGA CGTGGTGACC TTCACCGAAA AGGTCAAGTT CGCAGGCCCA GCCGTACCAG CCTACGAAGT TACCCGCAGC TTTATCGATG CCGGCACCGT GGCCAGCATT CTGACCGATG CCAATAATGG CGAAAACTGG TTCGCGCTGG ACCAGAGCGA CCAGAAGATC AATGAGCTAC GCGATAGAAT TGCAGGTGCC CCTTCGTTAG AGGTGCGTGA TCCGCTGCTG AACGAACTAC AGAAATACGT CATCGAGCAA GGGTATTTCA TCCCTCGCAC CCAGATCGTT CAGCGCATTT ATGTCCAGTC CCCGAAGCTT TCAGGCGAAG TCTATAACGG CATTGCCTAT GCCAGCTACT ACACCGCAAA AATCAGCCAA TAA
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Protein sequence | MIKHSDSMAL SRRRLLLAGS AILSVALVAS TGLKPAHSAG NAKDGGDITF LIDSLGNTWI PNNSAISSFQ GHVWGHVADK LVYVDADGKV SPWIAERWDQ NEGATEFTLH LKTGVTFSDG TPLDAAAVVA NLDIWYAGRK SEGINPIGLF PKTYDHAEAI DPSTVKVVFK KPTLGFIPTL GYHGSILISP KTISQPATQQ ADLGKTSGSG PYVVESWKEG DFVKLVKRKD YNWGPAAVGH TGPAFLDSIT YKLVSEPSLR VAAVQSGQAD IAYNASPQEL KSLKDEGFTV ATPRYLGFVN GWAVNTKLEP YNDVRVRQAL QSGIDRQEII DTVYTSDWKL ATSFIQSNVP GATDQSTLLA YDSARAEKLL DDAGWTKGAD GIRAKDGKPL LLTLYSNPYL ATSKAVDELI AQQLGKIGWK VNIRTYDVVT FTEKVKFAGP AVPAYEVTRS FIDAGTVASI LTDANNGENW FALDQSDQKI NELRDRIAGA PSLEVRDPLL NELQKYVIEQ GYFIPRTQIV QRIYVQSPKL SGEVYNGIAY ASYYTAKISQ
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