| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5096 |
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| Symbol | |
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| ID | 7380907 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 87500 |
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| End bp | 89038 |
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| Gene Length | 1539 bp |
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| Protein Length | 512 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643648760 |
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| Product | GGDEF family protein |
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| Protein accession | YP_002546997 |
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| Protein GI | 222106206 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTATCCCT GGTCTGAACT CCTTGCGAAT CTGGCAATTG TTGCCATCAC AACGTCGACC
TGGACATTCG TCCGGCCACA CCTCGCTGGG CAAGGAGCAC GCGCTTTTTC GTTGGCTTTT
GGCTGCCTTA TGGCGGTTGG GTTGCTCGCG ACCATGGCCT TGCCGTTTCG CTTCACCGAC
GGTGTTTTCC TGGACACCCG GTATACATTT CTCGCTATAT CGGGTTTCTT CGGCGGCCCC
ATTGCGGCCT TTCCACCGCT TATCGTGGGA ATTATCAGGC GATTGATGAT CGGAGGTATG
GGGATAACGG TTGGCATCCC GCAAATCATC GCGGCTGCAT GCATCGGTGT CGTCGCAAGC
CGATTGCTTC GTGGCAAGAT CCCGACTTTC CCGCAGATCG CAGCACTTGC TCTGCTCGTC
GCAGTCAGCG GCGTAGCCGG CTTCTTTGTC GTGCGTCCCT TTGAGGTCTG GGGCAACCTG
ATCGTCGTGA CGGTCGGTCC ATTCATGGTG GTCTTGTTTG GGGCCACCCT GTTGTCCGCT
GTTGCCATGG CGCAGGAGAT GAAGCGGACA AGGCTTGAAA GTGATTTGGC CGCGGCACAG
ATCCGTCTCG CCGATGCGCT CGCGACAATG GCGGATGGCT TGGCACTTTT CGACCGCGAT
GGGGTGTTGG TTTTCACCAA TCAAAGATAC CTCGATATCT TCAAGGAAAC GGCGGATGTC
AGGGTGCCCG GGAAAAACAT CCGGGAAATC TTGCGGACAT CCTTTGAACG TAACGAAGAA
GCGCGCGTGG AATCGGATGT CGATCCTATC ATCGATCGGG TTGTGGAAGG CCTGTTCCGG
CCCAGCGATC GCCTGATCCA ACTGGCCGAC GGGCGTTCAA TCGAGGCAAG AACGCGTGTC
ACGGGCGAGG GGGAGGCGAT GATCGTTTAC GCGGATATCA CTCTTCATTG TCAACGTGAG
GCACGGTTGC ACGAGTTGAA CGATCGCTTG TCGGCCTTGG CGGATACGGA CGAATTGACT
GGTTTGATGA ACCGCCGTGG TTTGGAAGCG TCCATGGATC AAGCTTTTGA TCGAGCCAAG
GGTGAGGGCG CCAATATTGG CCTTCTCCTT ATCGATGTCG ATTGGTTCAA GGCTTATAAC
GACACCTATG GCCATCCCGC CGGGGATAAA TGTCTACAGC TTGTCGCCAA CACGGTTCAT
GCGACGTCCA GGTCATTTGC GGGAAGCATT GTGGCGCGAT ATGGTGGTGA GGAATTGACC
GTCGTGTTGC CGAACGCATC AATATCCGAA ACCGAGGCAG TCGCTCGGCT TGTTTGTACA
GCCGTGCGTA CTCTGGCCAT CGAGCATGTT GGAAGCGAAA AGCGCATCGT CACAGTGAGC
GTCGGTGCCG CCAATCTGAA ATCGATGCCG GGCCTGCGCA AGACGGATCT CCTTCTACAG
GCTGACGCGG CGCTTTATGC AGCCAAGGCG GCGGGGCGGG ACTGTATCCA GACAGCTCCT
GATCTCCTTC CGGTCGCCAA GCGCGCCGAC AGCCGTTGA
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| Protein sequence | MYPWSELLAN LAIVAITTST WTFVRPHLAG QGARAFSLAF GCLMAVGLLA TMALPFRFTD
GVFLDTRYTF LAISGFFGGP IAAFPPLIVG IIRRLMIGGM GITVGIPQII AAACIGVVAS
RLLRGKIPTF PQIAALALLV AVSGVAGFFV VRPFEVWGNL IVVTVGPFMV VLFGATLLSA
VAMAQEMKRT RLESDLAAAQ IRLADALATM ADGLALFDRD GVLVFTNQRY LDIFKETADV
RVPGKNIREI LRTSFERNEE ARVESDVDPI IDRVVEGLFR PSDRLIQLAD GRSIEARTRV
TGEGEAMIVY ADITLHCQRE ARLHELNDRL SALADTDELT GLMNRRGLEA SMDQAFDRAK
GEGANIGLLL IDVDWFKAYN DTYGHPAGDK CLQLVANTVH ATSRSFAGSI VARYGGEELT
VVLPNASISE TEAVARLVCT AVRTLAIEHV GSEKRIVTVS VGAANLKSMP GLRKTDLLLQ
ADAALYAAKA AGRDCIQTAP DLLPVAKRAD SR
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