| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5003 |
|---|
| Symbol | |
|---|
| ID | 7381171 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | + |
|---|
| Start bp | 5079 |
|---|
| End bp | 6632 |
|---|
| Gene Length | 1554 bp |
|---|
| Protein Length | 517 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 643648685 |
|---|
| Product | phospholipase/phosphatidylserine synthase |
|---|
| Protein accession | YP_002546922 |
|---|
| Protein GI | 222106131 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1502] Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGGGTT TCGAGAAGGC CAGCAGCCAT CACCGCATTG GATCGGATCA GGTGATCAGA
GTGGGCTATA ATGCCTGGAA GACCGGTGTT GCATCGAAGG CGGGATTTTT GATTGATGGT
GCGCAATATT TTCGCGCACT TGCGGATTCT CTATCTCGCG CTCAGGAGCA GATATTCATC
ATCGGTTGGG ACTTTAACCC TGACATCCAG CTTATACCGG AAGATCAAGC TTCACCCACT
TTAGGTGAGT TCCTTATTTC GCTTGTCGAA AACAATAGCC GTCTCGCCAT TCACATTCTT
GTCTGGGCGA TGGGTCCAAT CTATTCTGGA AAATCCCTGC GCATGCTTGG GAACACCGAA
CTGAAGTCGC ATCCAAGGAT CGACTTGCGG CTTGATACGC GGCATGCTGT TCGAGGTTCT
CATCATCAGA AAATGGTGGT TATCGACGAT GCGCTGGCGT TTATTGGCGG CATCGATCTG
ACAGCCAAGC GCTGGGATAC GCCCGAGCAC CGGGCCGATC AACCTTTACG CTGCACACCA
AAAGGCGAAC GGTATGAGCC GGTTCACGAT GTGCAAATGG CAGTTGATGG TGAAGCGGCC
GAAGTAGCGG CTGAAATCGC CAGGCGTCGG TGGTGGCAGG CGACAGGTGA GGATCTTGTG
CGTCCACGCT GCTATTCTCA TTCTTTTCCG CCAGCTGCAC GCTATGTATT TAGCAATTGT
GACATCGCTT TTGCGCGGAC CGAACCGGCA ATTCGCAGAA GCACATCCGT TCGTGAGACG
TTACAACTGA CCCTTGACTG CCTGTCGCGG GCAGAGAAGC TTATCTATAT AGAAAGTCAA
TATTTTGCAT CGAAAGATGT AGCGGATCTT TTGGCTTCTC GATTGAGTGA GCCGGATGGT
CCTGAGGTCG TATTGATTTC GACGCTGAAT TCGCATGGAT TTCTCGAGAG AAAAGTACTG
GGGGAAAATC GAGACCGAAT GATCCGCAAG CTTAGACAAG CTGATCGATT TGGTCGGTTT
CGTGCTTTCT ATCCAGTTGT CCCAGATGAG AGCCGCGATA CTAAGTGCGA GGAAGTCCTG
GTCCATGCCA AGTTGATTAT CGTCGATGAT GTTTTCATTC GCGTCGGGTC GTCGAACCTA
AACCAGAGAT CGGTGGGCCT TGATACGGAA CTTGACGTCG CCATCGAAAT GCATAGCGAC
AAAGAACGGC AGATCCTGGC CGACATGCGA AATGGGCTGC TTGGTGAGCA TCTTGGTCTG
CCGAGCACTG AATTGGCAAA AGCCCATCAA GAAGCCGGAT CATTGGTGCG CGCCTTGGAT
CGAGTGAACG TTGGATTGCG TGGGCTGCGA TCTTTTCCTG TCGGTGACGA GAACGGCAAG
ACAGGTTTGC ATTTTGCTAC GGGCCTTGTG GACCCAAAAG CACCTTGGTG GCCGTTGCAG
TTGGTTTCTA TTCCATTTTC GATGCTCAAG AAAATCCGAC GCATGGCGAT GTCGAAGGCA
GGACTGAGCC AGGCCGATGG ACAACAGCAG CGGATATCTG CCAACAACAG TTAA
|
|---|
| Protein sequence | MQGFEKASSH HRIGSDQVIR VGYNAWKTGV ASKAGFLIDG AQYFRALADS LSRAQEQIFI
IGWDFNPDIQ LIPEDQASPT LGEFLISLVE NNSRLAIHIL VWAMGPIYSG KSLRMLGNTE
LKSHPRIDLR LDTRHAVRGS HHQKMVVIDD ALAFIGGIDL TAKRWDTPEH RADQPLRCTP
KGERYEPVHD VQMAVDGEAA EVAAEIARRR WWQATGEDLV RPRCYSHSFP PAARYVFSNC
DIAFARTEPA IRRSTSVRET LQLTLDCLSR AEKLIYIESQ YFASKDVADL LASRLSEPDG
PEVVLISTLN SHGFLERKVL GENRDRMIRK LRQADRFGRF RAFYPVVPDE SRDTKCEEVL
VHAKLIIVDD VFIRVGSSNL NQRSVGLDTE LDVAIEMHSD KERQILADMR NGLLGEHLGL
PSTELAKAHQ EAGSLVRALD RVNVGLRGLR SFPVGDENGK TGLHFATGLV DPKAPWWPLQ
LVSIPFSMLK KIRRMAMSKA GLSQADGQQQ RISANNS
|
|---|
| |