Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_4222 |
Symbol | |
ID | 7386979 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 3550480 |
End bp | 3552264 |
Gene Length | 1785 bp |
Protein Length | 594 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 643652897 |
Product | glycosyltransferase TPR domain-containing protein |
Protein accession | YP_002551070 |
Protein GI | 222150113 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG3914] Predicted O-linked N-acetylglucosamine transferase, SPINDLY family |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAGAAAA CTAGCTGCCC CTTTGCAGTC CGATGCTGCA AGCCTGAACG AAAGACAAGC CCTGCGCCAG ACCAACGGTA TATCGCCGAG CGATCAACAG GAGTGACAGC AGACGCAATG TCCGACAATC TTGCCGCAGC ATTGGCGCTT TACGCCTCCG GAAACCTGCC GGACGCTTAT ACCGCGTTGA AAAGCACTCT GGCCAAAAGC CCGGCTCCGG GGCCGAAAGC CTTGCTGGTC ATGGCGCAGT GCTGTGCCAA GCTCGACCAT TTCACCGAAG CCGCCGTCTT TTACCGGCAG GCCGCAAAGA TCTTGCCTGA TCAAGCTCTC ACCCTGATCA CACTCGCAGA AAAAATGGAG CGGTCCGGGA TTGAAAAGGC AAGTGCGCTG GAAATCCAGA CCCTCGAAAC ATCCAGACGG GCCATTCGCT CCGGTCCGTT TGATGTCCAA TCCTGGAAAA CCTATCGGAC GGCTTTGAGG CACACGCTCA ATATCGACGA AATGCGCATG AGCGACCAGG CGGTTCGGGA CCGGTTGAAC CGGCAGGAGG AGAACTATTA TTCGGTCGAT AGCCAAACCG TGCATCTGAG CTGGTGCGAT GACGAGACTT TGAACAGCCG CTGGAACAAT GACTTGCCAG CTCCTATCTC GGCTTCGCAA GAGTGGAAAA AACCGGCTGG CGAGACACTC AAACTCGCCT ATCTGCTTGC CGATGGGCCA AGCGACGACC CACTTCGCAG GCTTACCCTG TCGCTTGCCG CCCGACACAA CCCGACCGAT TTCGACGTTC TGCTGATTTG CAACGAGCCG CCGGGACCGG ACGAATTGAA TGCAGAGATG ACGGCTCTCA GCCTCAAGGA TCTCTGTGAG GATACGGCCG TGGCCGCTCT GCGCGCCGCT GACATCGATA TCCTGATCGA TCCGCTTGGC CATGGCGACG GTGGCCGCCC TGATCTGCTG CGGCACCGGA TCGCGCCGCT GCATCTGGCA ATGGCCGGTC ACCCGGGGGC AAGGACCGGG CTTATATGCG ACTATATGCT CGCAAACACC GCAGTTCTGC CGAAGGACGA CCTCCGCCTC CATGGCCGGG CGATCTGCCA TCTGCCGGAG ACTTTTCTCG TCAGTTCTCC CATGCAACAG CCGCCTTCGC TGTCGCGCCA GCAGTTCGAC CTGCCTGAAG ACGGAGTGGT CTTCGCGGCT TTTCATCCCA CCGAACAGAT ATCTCCACGA ACCGCCGATC TCTGGGTCAA TATTCTGCGG CAGACGGAAA ATAGCCTGCT ATGGATATCC TGCGGCAATT ACGCCCGAAA CAATTTCAGC ACCTGGATGA ACCGTCAGGG CATAGCCGAA AACCGATTGG TTTTTCGCAA CCCCGCCAGG CCCATGGAGC AAGTTGGCTG GATGACCCTC GCCGACATCG CCCTCGATTC TTTCCCTTAT AACGACGGAT TTTCGACGCT TGCCGCCTTG CAGGCCGGTT TACCCGTGCC AACTTTTTCG GGCGGAAATT TCGCCAGTCG TGTCACGGCA AGCCTATTGC AGGCTTGTGG GCTAGAAAAG CTGATTGCCC GAGACGCCGA TGCCTATGTG GCTCTGTGTA TCGATCTGGC CCGCGATAAG AGCGCCCGCA ACGCCTTGAA ACAGACTATT CGCGCACAGG GTCCAAGATC GCCTCTGTTT GATATCACAG GCTTTATCCG CCACTTGGAA GCCGCCTATC ACACCATGGC AGCGCGGGCC GCAACGGGCC TTGAGCCGCA GGATTTTTCA GTTCCAGTCC TCTAA
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Protein sequence | MQKTSCPFAV RCCKPERKTS PAPDQRYIAE RSTGVTADAM SDNLAAALAL YASGNLPDAY TALKSTLAKS PAPGPKALLV MAQCCAKLDH FTEAAVFYRQ AAKILPDQAL TLITLAEKME RSGIEKASAL EIQTLETSRR AIRSGPFDVQ SWKTYRTALR HTLNIDEMRM SDQAVRDRLN RQEENYYSVD SQTVHLSWCD DETLNSRWNN DLPAPISASQ EWKKPAGETL KLAYLLADGP SDDPLRRLTL SLAARHNPTD FDVLLICNEP PGPDELNAEM TALSLKDLCE DTAVAALRAA DIDILIDPLG HGDGGRPDLL RHRIAPLHLA MAGHPGARTG LICDYMLANT AVLPKDDLRL HGRAICHLPE TFLVSSPMQQ PPSLSRQQFD LPEDGVVFAA FHPTEQISPR TADLWVNILR QTENSLLWIS CGNYARNNFS TWMNRQGIAE NRLVFRNPAR PMEQVGWMTL ADIALDSFPY NDGFSTLAAL QAGLPVPTFS GGNFASRVTA SLLQACGLEK LIARDADAYV ALCIDLARDK SARNALKQTI RAQGPRSPLF DITGFIRHLE AAYHTMAARA ATGLEPQDFS VPVL
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