Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_4213 |
Symbol | |
ID | 7386974 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 3544867 |
End bp | 3546279 |
Gene Length | 1413 bp |
Protein Length | 470 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 643652892 |
Product | integral membrane protein |
Protein accession | YP_002551065 |
Protein GI | 222150108 |
COG category | [S] Function unknown |
COG ID | [COG3182] Uncharacterized iron-regulated membrane protein |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0397228 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGTCCACCA TCACATCCCT GCCGGTCGAA AAGCCGGTAG CAGCCTCGAC CCGAGGATTT TATTTTGCCG CCTGGCGCTG GCATTTCTAT GCAGGGCTCT ATGTCGCCCC TTTCCTGATT GTGCTGGCCG TGACCGGGCT GATCATGATG TGGAGCGCCA CCCTGGTCGG ACGCGACGGA GAAAAGGCTT TCACCGTCAC CCCCACATCT GCCCAGACGC TTGTGTCGCA ACAGGCAGAT GCCGCACTGT CCGCCATTCC GGGAGGGGTT ATCGCTCAAT ATATCGCGCC AGCCACACCA GAAAGTGTGG CGGTTTTCCG GGTTAACCGG GGCCAAGAGT CGATGATGGT CGCCATCAAT CCTTATGACG CGCAAGTGCT GGGTCAATGG AGCCGCCGCA CCGCGCTCTA CGACCTGGCC GAAAGCATTC ACGGCGACCT GCTGATTGGC ACACTCGGCG ACAGGCTGAT CGAAATCGCC GCCGGGTTCG GCGTGGTGCT GATCATCACC GGGCTTTACA TGTGGTGGCC GCGTCAAGGC GAGAGCTATT TGCGACTGCT CATTCCAAGC TTTGCCGAAA AGGGTCGCCA GCTGTGGAAA TCCCTGCACC GCACCATAGG CTTTTACGCC TCGATCCTGC TTCTGGTCTT TCTGGTCTCG GGTTTGAGTT GGGCAGGCAT CTGGGGGGAA AAATTCACTC AGGCCTGGAG CACCTTCCCG ATTGGCAAAT GGAGCGATGC TCCATTATCC GATGCGACCC ATGCCACCAT GAACCATGGC AGTATCAAGG ATGTTCCCTG GACGCTGGAA CAGGCCCCCA TGCCGATGTC CGGCTCCGCC GCCGGTCATG CCGGCCTGCC GGGTGGACAG ACGGTGACGC TGGACAATGT CATCGCCTTT GCCCGCGCCA TCGGCTTCGA TCACCGCTTC CAGCTGAATT TCCCCAAGGA CGAAACCGGC GTCTGGAGTA TTTCGCGCGA TACGATGAGC AATGACAGCA CCAACCCGCT GTTGGACCGC ACCGTGCATA TCGACCGCTA TAGCGGCAAG GTGCTGGCCG ATATCAAATA TGAAAACTAT GGTCTGGCTG GCAAGGCCAT GGCCGTGGGC GTTTCCTTTC ACATGGGTAC GATTGGCCTG TGGAATCTGG CACTGGTCAC CGTTTACTGT CTGGCGGTGA TTTTCCTCAG CGTCAGCGGC ATCGTTATGT GGTGGATACG CCGTCCGAAA GGCGCGTCAC GGCTGATGGC GCCCGCCTAT CCATCCGACA TGCGCCTCTG GAAAACCGGA GCGATCGTCA TGCTGCTCAC CTCCCTGCTG TTTCCGCTGA CGGGCGCGGC GCTGCTGGCT GTCATCCTGC TCGATATGGT GCTGATCCGC CGGATCAGGC CGTTGAAAAG GGCATTGAGC TAA
|
Protein sequence | MSTITSLPVE KPVAASTRGF YFAAWRWHFY AGLYVAPFLI VLAVTGLIMM WSATLVGRDG EKAFTVTPTS AQTLVSQQAD AALSAIPGGV IAQYIAPATP ESVAVFRVNR GQESMMVAIN PYDAQVLGQW SRRTALYDLA ESIHGDLLIG TLGDRLIEIA AGFGVVLIIT GLYMWWPRQG ESYLRLLIPS FAEKGRQLWK SLHRTIGFYA SILLLVFLVS GLSWAGIWGE KFTQAWSTFP IGKWSDAPLS DATHATMNHG SIKDVPWTLE QAPMPMSGSA AGHAGLPGGQ TVTLDNVIAF ARAIGFDHRF QLNFPKDETG VWSISRDTMS NDSTNPLLDR TVHIDRYSGK VLADIKYENY GLAGKAMAVG VSFHMGTIGL WNLALVTVYC LAVIFLSVSG IVMWWIRRPK GASRLMAPAY PSDMRLWKTG AIVMLLTSLL FPLTGAALLA VILLDMVLIR RIRPLKRALS
|
| |