Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_4198 |
Symbol | dapF |
ID | 7386963 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | - |
Start bp | 3535752 |
End bp | 3536663 |
Gene Length | 912 bp |
Protein Length | 303 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 643652881 |
Product | diaminopimelate epimerase |
Protein accession | YP_002551054 |
Protein GI | 222150097 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0253] Diaminopimelate epimerase |
TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGGCAATC GGGTCGAATT CGCGAAGATG AACGGGCTTG GCAACAAGAT CCTGGTCGTT GACATGCGCG GCCGTGCCGA CCGGGTCATG CCGCAGGCAG CTATTGCGCT GGCGGGTAAC GCTGAAACCC ATTTCGACCA GATCATGGCG ATCCATGATC CGAAGCTGGC GGGCACCTTC GCCTATATTG ACATTATCAA TTGCGATGGC ACGCTGGCGC AGGCCTGTGG CAACGGTACG CGCTGTGTGG TGCAGGCGCT GTCGGCGGAA ACCGGCCTGA AGGCTTTCAC CTTCCAGACG CTGGCCGGTA TTCTCAATGC TGTCGAGCAT GACGATAGGA CGGTGTCCGT GGATATGGGC TCACCTGTGT TCGACTGGAA CCGCATCCCG CTGTCGGAAG AGTTTCATGA TACCAGCCGG ATCGAATTGC AGATCGGGCC GATTGATGCG CCGGTGCTGC ATTCGCCTGC CGTGATGTCG ATGGGCAATC CGCATGCGGT GTTCTGGGTG GACCGCGATC CGATGTCCTA TGATCTGGAA CGGTTCGGGC CGCTGCTCGA AAACCATCCG CTGTTTCCCG AAAAGGCCAA TATTACCTTG GCGCAGGTCA CATCCAGGAC CACGATGACC ACCCGCACCT GGGAGCGCGG CGCTGGGCTG ACGCTGGCCT GCGGTTCCGC CGCTTGTGCT GCGGGCGTTT CCGCAGCGCG CACCGGGCGC GCCGAGCGCA AGGTGACGAT CACCGTCGCC TCCAGCCCCA ACCGCCAGGC CCTCGACATC GAATGGCGCG AGCGTGACGG GCATGTGATC ATGACCGGTG CGGCAGAATG GGAATGGGCT GGACAGCTCG ATCCGCAGAC CGGCGACTGG CAGCGTGAGC AGCAGGCTGG CCACGAGGCC TCCGTCTCGT GA
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Protein sequence | MGNRVEFAKM NGLGNKILVV DMRGRADRVM PQAAIALAGN AETHFDQIMA IHDPKLAGTF AYIDIINCDG TLAQACGNGT RCVVQALSAE TGLKAFTFQT LAGILNAVEH DDRTVSVDMG SPVFDWNRIP LSEEFHDTSR IELQIGPIDA PVLHSPAVMS MGNPHAVFWV DRDPMSYDLE RFGPLLENHP LFPEKANITL AQVTSRTTMT TRTWERGAGL TLACGSAACA AGVSAARTGR AERKVTITVA SSPNRQALDI EWRERDGHVI MTGAAEWEWA GQLDPQTGDW QREQQAGHEA SVS
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