| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3996 |
|---|
| Symbol | |
|---|
| ID | 7387332 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 3368285 |
|---|
| End bp | 3368764 |
|---|
| Gene Length | 480 bp |
|---|
| Protein Length | 159 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 643652722 |
|---|
| Product | transcriptional regulator protein |
|---|
| Protein accession | YP_002550897 |
|---|
| Protein GI | 222149940 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1846] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAGACA CTTCAGATTT CTATCGCCGC GTCGAAACCG AGTGCCCGGC CTTCCAGGCC
AGGGTCGCCG CGAGGGCCTT GACACGCTAT TACAATGCCT GCTTTCGACC CCTAGGGATC
ACCGCAGAGC AGTTCAGTCT TCTGGTGGGG ATTGGCGGTA GCCACGAGCC AACGCTCGCT
GAACTGGCGG CACGCGCCGG GGTCGACGCC ACCACTCTCA GCCGGAGCGT AAAGAGCCTG
GAACGGAACA ATCTCGTGCA TAGTCACGGA GGGCGGGGCC GGGCCGGCAA ACGCCTGGCG
CTTACCGACA AAGGCCTCCA GTTGATGGCC AAATCTATGG CCACCTGGGA GGATGCCCGC
GTCCGTCTGG CTGAGGCTCT CGGTGAGGAA ACATCACATG TTGCGGGAAG CGTGATGTCT
CAGCTTGCTG TCGCCGCGCA GACCGCGACC TCTGCGGCCG GTTTCGGAGT GGCGGAATAG
|
|---|
| Protein sequence | MTDTSDFYRR VETECPAFQA RVAARALTRY YNACFRPLGI TAEQFSLLVG IGGSHEPTLA
ELAARAGVDA TTLSRSVKSL ERNNLVHSHG GRGRAGKRLA LTDKGLQLMA KSMATWEDAR
VRLAEALGEE TSHVAGSVMS QLAVAAQTAT SAAGFGVAE
|
|---|
| |