Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_3837 |
Symbol | emrA |
ID | 7388527 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | - |
Start bp | 3188788 |
End bp | 3189963 |
Gene Length | 1176 bp |
Protein Length | 391 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 643652594 |
Product | multidrug resistance efflux pump |
Protein accession | YP_002550775 |
Protein GI | 222149818 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | [TIGR00998] efflux pump membrane protein (multidrug resistance protein A) |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGACCGGCG AGGCGGGTTC CGATCCGGTG ACAGGTGACG CCACGGCACG CGACGCCAAG GCGCGGGCTG AAACCGCATC GCCCGCCGCG AAGGTGGCGC CCGCCGCAGG CCAGGCTCCG CCGAAGAAGC GCCGCAACTT TGCGCTGCCG GTCATCGCGC TGGCCGTTTT GGCGGGTGCG GGCTATTACG GTTACAATTA CTGGACCGAG GGCCGGTTCA TGATCTCCAC CGACGACGCC TATATTGGCG GCGATATCGC GGTGATTACC CCGAAGGTGA CCGGCTATGT CCAGTCGGTC TCGGTGACTG ACAACGATCA TGTTAAGAAG GGCGACGTGA TCGCCACGCT CGATGACGGC GATTATCGCA TTGCGCTCGA TCAGGCCAAG AGCCAGCTCG CCACGCAGAA GCTGACGGTC GAGCGCATCG AGGCGCAGGT GCAGGGCGGC GAAGCGGCAC TTCAGCAGTC CAAGGCGCAG CAGGCATCCG CCGAGGCGAC GTTGCGTACG GCGCAATTGT CCTTCAAGCG CGTCACGGAT TTGCGGGCCC AGTCCGTGAT GTCTCAGTCG GAGCTGGACA CGGCAACATC GACGCTCGCT GTCGCCCAGG CCAATGTGGA TGCTGCGGTT GCGGCTGTTG CCTCCTCCGT TTCAAGCATT GCCGTCCTCA AGGCCCAGAA AGCCGAGGCG CAGGCTGGCG TGCTGACAGA AGAAACGGTG GTTGCAAAGG CGCAGCGCGA TCTGGATTTC ACCGTGCTGC GCGCGCCTTA TGACGGTGTG ATCGGCAATC TGGGCGTCCA GGTCGGCGAT CTCGTGTCGA GCAGCAAGCG GCTTGCCTCA CTGGTGCCGA TTGGCCGTCT CTATATCGAT GCGAACTTTA AGGAAACGCA GCTTTCCGGT ATCGTGCCGG GCTCGAAGGT GCGGGTGCAT GTGGATGCCT ATGATGAGCA TGCCTTCGAG GGTAGGGTCG TCTCGATCGC CGCGGGGTCC GGTTCGGTCT TCTCCATGCT GCCGGCGGAA AACGCCACGG GCAATTTCAC CAAGGTCATC CAGCGTGTTC CGGTGCGGAT CGCCATTCCG CAGGAGATAC TCGACAAGGG TTATCTGCGT GCGGGTCTGA GTGTTGTGGT CGATATCGAC ACCCGCACCG CGCCGAAGGC GCCTGACGCG AAGTAA
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Protein sequence | MTGEAGSDPV TGDATARDAK ARAETASPAA KVAPAAGQAP PKKRRNFALP VIALAVLAGA GYYGYNYWTE GRFMISTDDA YIGGDIAVIT PKVTGYVQSV SVTDNDHVKK GDVIATLDDG DYRIALDQAK SQLATQKLTV ERIEAQVQGG EAALQQSKAQ QASAEATLRT AQLSFKRVTD LRAQSVMSQS ELDTATSTLA VAQANVDAAV AAVASSVSSI AVLKAQKAEA QAGVLTEETV VAKAQRDLDF TVLRAPYDGV IGNLGVQVGD LVSSSKRLAS LVPIGRLYID ANFKETQLSG IVPGSKVRVH VDAYDEHAFE GRVVSIAAGS GSVFSMLPAE NATGNFTKVI QRVPVRIAIP QEILDKGYLR AGLSVVVDID TRTAPKAPDA K
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