Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_3832 |
Symbol | xylA |
ID | 7388523 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | - |
Start bp | 3183055 |
End bp | 3184362 |
Gene Length | 1308 bp |
Protein Length | 435 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 643652590 |
Product | xylose isomerase |
Protein accession | YP_002550771 |
Protein GI | 222149814 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2115] Xylose isomerase |
TIGRFAM ID | [TIGR02630] xylose isomerase |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.100149 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCACAG GCTTTTTCGG CGACATCACC AAGATCAAAT ATGAAGGCCC TGACAGCACC AATCCGCTGG CCTTCCGCCA CTATAACCCC GATGAAGTGG TGATGGGCAA GCGGATGGAG GACCATCTGC GTTTTGCCGT GGCCTACTGG CACACCTTCG TGTGGCCGGG CACCGACCCG TTCGGCGGCA ATACGTTTGA GCGTCCTTGG TTCAAGGATT CGATGGAGGC TGCCAAGCTG AAGGCCGATG TGGCCTTTGA ATTCTTCCAG TTACTCGGCA CGCCTTACTA TTGCTTCCAT GATGCGGATG CGCGTCCTGA AGGCGCGTCC TTTGCGGAAA ATACCAAAAA TCTCAATGAG ATTGTCGATT ACTTTGCCCA AAAGCAGGCC GATACCGGCG TCAAGCTGTT GTGGGGTACG GCCAACATGT TCTCGCATCG TCGCTATATG TCGGGTGCCG CCACCAACCC GGACCCTGAC GTCTTTGCCT TTGCCGCCGC AACCGTCAAG ACTTGCCTGG ATGCCACCCA GAAGCTGGGC GGCGAAAACT ACGTGCTGTG GGGTGGCCGT GAAGGCTATG AAACCCTGCT CAACACTGAC CTGAAACAGG AACTGGACCA TATGGGCCGT TTCCTCAACA TGGTGGTGGA ATACAAGCAC AAGATCGGCT TCAAGGGCGC AATCCTGATC GAGCCGAAGC CGCAGGAGCC TTCCAAGCAT CAGTATGATT ATGATGTGGC CACCGTCTAC GGCTTCCTCA AGACTTATGG TCTGGAGAAG GAAGTGAAGG TCAATATCGA GCAGGGCCAT GCCATTCTGG CCGGTCATAC GTTTGAGCAT GAACTGGCGC TGGCCAACGC GCTGGGCATT TTCGGTTCCA TCGACATGAA CCGCAATGAC TATCAATCCG GCTGGGATAC TGACCAGTTC CCCAACAACG TGCCGGAAAT GGCGCTGGCC TATTATCAGG TCCTGCAGGC GGGTGGCTTT ACCTCCGGCG GCACCAATTT CGATAGCAAG CTGCGCCGCC AGTCCATCGA CCCGGCGGAT CTGCTGATCG GCCATATCGG CGGCATGGAT TGCTGCGCCC GTGGCCTGAA GGCGGCTGCG AAAATGGTGG AAGACAAGGC TCTGTCCGGC CCGCTTGCCA ACCGTTATGC AGGCTGGAAT AGCGACGGCG CCAAGGCCAT GCTGGCCAGC GGCACGCTGG AAAGCATTGC GGCCCGCGTT GAAGGCGAAA ACATCAATCC GCAGCCGGTC TCCGGTCAGC AGGAATTGTT GGAAAACGTC GTCAATCGCT ACGTCTGA
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Protein sequence | MSTGFFGDIT KIKYEGPDST NPLAFRHYNP DEVVMGKRME DHLRFAVAYW HTFVWPGTDP FGGNTFERPW FKDSMEAAKL KADVAFEFFQ LLGTPYYCFH DADARPEGAS FAENTKNLNE IVDYFAQKQA DTGVKLLWGT ANMFSHRRYM SGAATNPDPD VFAFAAATVK TCLDATQKLG GENYVLWGGR EGYETLLNTD LKQELDHMGR FLNMVVEYKH KIGFKGAILI EPKPQEPSKH QYDYDVATVY GFLKTYGLEK EVKVNIEQGH AILAGHTFEH ELALANALGI FGSIDMNRND YQSGWDTDQF PNNVPEMALA YYQVLQAGGF TSGGTNFDSK LRRQSIDPAD LLIGHIGGMD CCARGLKAAA KMVEDKALSG PLANRYAGWN SDGAKAMLAS GTLESIAARV EGENINPQPV SGQQELLENV VNRYV
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