Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_3792 |
Symbol | pckR |
ID | 7388245 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | - |
Start bp | 3153623 |
End bp | 3154648 |
Gene Length | 1026 bp |
Protein Length | 341 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 643652561 |
Product | transcriptional regulator LacI family |
Protein accession | YP_002550742 |
Protein GI | 222149785 |
COG category | [K] Transcription |
COG ID | [COG1609] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.190437 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGGCGCAAA AGATCAAGTT ATCGACCATT GCCGAAAGTC TCGGCCTGTC TACCGCCACG GTATCGCTGG CCTTGCGAGA CAGTCCGCTG GTGGCGGCAG ATACGCGCGA AAAGATCAAG GACCAAGCCC GGCTGCTTGG CTATATCTAT AACCGTCGCG CCGCCAGCCT GCGCACCTCG CGTTCCGGCA TTATCGGTGT TGTCGTTCAT GACATCATGA ACCCGTTTTA CGGCGAAATT CTGAAAGCCA TTGAAAGCGA GCTGGACCGC AGCCGCCAGA CGTTCATTCT GTCCAACCAC TACGATTCGG TGGAAAAGCA GCGGACCTTC ATCGAGACGC TGCTGCAACT GGGCGGTGAC GGGGTGATCA TGTCGCCTGC CATCGGCTCA CCGCCGGAGG ATGTGATGCT GGCCGAAGAC AATGGCATGC CCGCCATCCT GATTGCCCGG TCCATGGACG GGCTGGCCCT TCCGACCTAT CGCGGCGATG ACAGCTACGG CATTTCGCTG GCCACCAACC ACCTGATCGG CCTTGGCCAC CGCGTCATCG CCATGGTTGG CGGCACCGAT CAAACCTCGA CGGGGCGCGA CCGCTATCAG GGCTATGTCA ACGCCTTGCG CAAGGCGGGC ATTGCCGTCG ATCCCAATCT GCGCCTTCCC GGACCGCGCA CCAAACAGGG TGGTTTCGAG GCGGCGGTGA ATTTTCTGTC GCTGCCACAA AAGCCGACGG CGGCGGTGTG CTGGAACGAT CTGGTCGCGA TTGGGTTGAT GAATGGCATA TCGCGTGCCG GGCTGGTGCC GGGCCGCGAT ATATCCGTCA CCGGCTACGA CGATCTGGAG GAAGCCTCTA TTGCCACGCC GGCACTGACC ACTGTGTCAA ACGGACAGGC GGAAGTGGGC AGGCTTGCGG CGCGCGCGCT TCTGGATAAG CTGGCGGGCA GTCATGAGCC TGATGGTATT CACCTTATCA AGCCTGAAAT GCGTATCCGC CAATCGACTG GCCCCGTTAA ACATCGAGAC GAATAG
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Protein sequence | MAQKIKLSTI AESLGLSTAT VSLALRDSPL VAADTREKIK DQARLLGYIY NRRAASLRTS RSGIIGVVVH DIMNPFYGEI LKAIESELDR SRQTFILSNH YDSVEKQRTF IETLLQLGGD GVIMSPAIGS PPEDVMLAED NGMPAILIAR SMDGLALPTY RGDDSYGISL ATNHLIGLGH RVIAMVGGTD QTSTGRDRYQ GYVNALRKAG IAVDPNLRLP GPRTKQGGFE AAVNFLSLPQ KPTAAVCWND LVAIGLMNGI SRAGLVPGRD ISVTGYDDLE EASIATPALT TVSNGQAEVG RLAARALLDK LAGSHEPDGI HLIKPEMRIR QSTGPVKHRD E
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