| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3730 |
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| Symbol | gltD |
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| ID | 7388198 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 3094925 |
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| End bp | 3096379 |
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| Gene Length | 1455 bp |
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| Protein Length | 484 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 643652513 |
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| Product | glutamate synthase subunit beta |
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| Protein accession | YP_002550695 |
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| Protein GI | 222149738 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases |
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| TIGRFAM ID | [TIGR01317] glutamate synthases, NADH/NADPH, small subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.178567 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGGCAAGG TTACAGGTTT CATGGAAATC GACCGGCAGG TGGCGAAGTA TCAGCCGGCC
TCCGACCGCA TCCGGCATTT CCGCGAATTC ACCATTCCGA TGTCGGAACC GGAAGTACAG
AAGCAGGCGG CGCGCTGCAT GGATTGCGGC ATTCCCTATT GCCACGGCCC GACCGGCTGT
CCGGTGCATA ACCAGATCCC CGACTGGAAC GATCTGGTTT ATAACGGCAA GTGGGAAGAG
GCGATCCGCA ACCTGCATTC CACCAATAAT TTCCCTGAGT TTACCGGGCG TGTTTGCCCG
GCGCCCTGCG AGGAAGCCTG CACGCTGAAC CTGGAGGATG CGCCGGTTTC GATCAAGACC
GTTGAGCAGG CCATCGCCGA CAAGGCCTAT GAGCTGGGCT TCATCGTGCC GCAACCGGCC
ACGATCCATA CCGGCAAGAA GGTGGCGATC ATTGGGTCTG GCCCGTCAGG CATGGCCGCT
GCCCAGCAGC TTGGCCGCGC CGGGCATGAC GTGTATGTCT ATGAGCGCGA AACCAAGCCG
GGCGGTCTGC TGCGCTACGG CATTCCTGAT TTCAAGATGG AGAAGAACTT CATCGACCGC
CGCGTCGAGC AGATGAAGGG TGAGGGCGTC ACCTTCCATT GTGGCGTCAA TGTCGGTGTC
GATGTAACGG TGGAAAAGCT GTTGGCCGAT TACGATGCCG TCCTCTATTG CGGCGGCTCG
GAAACCCCAC GCGAAGCCGG CATTCCTGGC GTCGACCTGC ACGGCGTCTA TGATGCCATG
CCCTATCTAG TCCAGCAGAA CCGCCGGGTG GGCCGTGAAA ACATCGACAG CGTTGGCTGG
CCGTCCGAGC CGATCATCGC CGGTGGCAAG CATGTCGTGG TGGTCGGCGG CGGCGATACG
GCGTCTGACT GCGTCGGCAC GGCTTTCCGC CAGGGCGCTG TGAAGGTTAC CCAGCTCGAC
ATCCGTCCGC GTCCGCCGCA GACGGAAGAC AAGCTGGCCG TCTGGCCGTT CTGGGCCACC
AAGATGCGCA CCTCCTCCAG CCAGGCCGAA GGCGCTGTGC GCGAGTTCCA GGTGGGAACG
CTCGGATTCG TTGGCGAAGA CGGCATGCTG ACCGGTGTCA AATGCTGCCA GGTGGATGAT
CGTCGCCAGC CGATTGCCGG TTCGGAATTC ATCATCAAGG CCGATCTCGC CTTCATCGCC
ATCGGCTTTT CCGGCCCCTT CACCGACAGC GTCGTCAAGG AGTTGGACGG AAAGCTGGAC
CTCAATACCG ACCGGCGCGG CTCGACCAAC GTCATCGCCA ATGACAAGGA CTACCGCACC
TCTGTCGATA AATTCTGGGC AGCAGGCGAC GTGCGCCGTG GCCAGTCACT GGTGGTCTGG
GCGATCCGCG AAGGCCGCCA GGCAGCCCGC GCCATCGATG AAGCGCTGAT GGGTGTCACA
GTTCTTCCGC GCTGA
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| Protein sequence | MGKVTGFMEI DRQVAKYQPA SDRIRHFREF TIPMSEPEVQ KQAARCMDCG IPYCHGPTGC
PVHNQIPDWN DLVYNGKWEE AIRNLHSTNN FPEFTGRVCP APCEEACTLN LEDAPVSIKT
VEQAIADKAY ELGFIVPQPA TIHTGKKVAI IGSGPSGMAA AQQLGRAGHD VYVYERETKP
GGLLRYGIPD FKMEKNFIDR RVEQMKGEGV TFHCGVNVGV DVTVEKLLAD YDAVLYCGGS
ETPREAGIPG VDLHGVYDAM PYLVQQNRRV GRENIDSVGW PSEPIIAGGK HVVVVGGGDT
ASDCVGTAFR QGAVKVTQLD IRPRPPQTED KLAVWPFWAT KMRTSSSQAE GAVREFQVGT
LGFVGEDGML TGVKCCQVDD RRQPIAGSEF IIKADLAFIA IGFSGPFTDS VVKELDGKLD
LNTDRRGSTN VIANDKDYRT SVDKFWAAGD VRRGQSLVVW AIREGRQAAR AIDEALMGVT
VLPR
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