| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3563 |
|---|
| Symbol | |
|---|
| ID | 7388826 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 2956252 |
|---|
| End bp | 2957205 |
|---|
| Gene Length | 954 bp |
|---|
| Protein Length | 317 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 643652394 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002550577 |
|---|
| Protein GI | 222149620 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2390] Transcriptional regulator, contains sigma factor-related N-terminal domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCACGCA AAGCAGGTTC CAACGCCAGG CTGGACGACG CCGCCCGCGC CGGCTGGCTC
TATTATGTGG CTGGCCGCAC GCAGGACGAG ATCGCTGCGG CGATGAATAT TTCCCGCCAG
AGCGCCCAGC GGCTGGTGTC GCTGGCGGTT GCCGAAAAAC TGGTCAAGGT CCGCCTCGAT
CACCCGATTG CCGTCTGTCT GGAACTGGCC GATGCGGTGA AACAGGCCTA TGGGCTGAAG
CAGGTCGAGG TCGTGCCAAC CGATCCCGGC TCGGACGCCA CCGCGACAGG CATTGCCGAG
GCGGGCGCTG CCGAACTGGA GCGCTGGCTG AAACGGCCAG ACCCGCTCAC CATCGCCATG
GGCACGGGCC GCACACTGCG CGCCATGATC GACCAATTGC CGCAGATGGA CTGTCCGCAG
CACAAGATCG TCTCGCTGAC CGGCAATATC AGCCCGGATG GATCGGCGGC CTATTTCAAC
GTGATCTTTT CCATGGCCGA TGCAGTGAAG GCCCGGCATT TTCCAATGCC GCTGCCGGTT
ATCGTTTCCA GCGCAGAGGA GCGCGACCTG TTGCACCGCC AGCCGCTGGT TGCTCCCACC
ATCGCGCTTG GCAGCCAATC CGATGTGACC TTCGTCGGTA TCGGTGAGAT GACCCTCAAC
GCGCCCTTGC TTCAGGACGG ATTCTTGAAG GAAGCCGAAA TGCGCAATCT TCTCGCCATC
GGCGCCACCG GTGAAATCTG CGGCTGGATC TTCGACGCCA AGGGCAAGCT GCTGGACGAC
CCGGTCAATA GCCGTGTCGC CAGTATGAAG ATCCCGTCGC GTCAAACCTC TGTCGTGATC
GGCATGGCGC GCGGCAAACG CAAGCATGCC GCCATCCGGG CTGCTGCCCG GGGTGGCCAT
GTCAACGCGC TGATCATCGA TGAAGATGCG GCCCGCTACC TGCTCGGACT GTGA
|
|---|
| Protein sequence | MARKAGSNAR LDDAARAGWL YYVAGRTQDE IAAAMNISRQ SAQRLVSLAV AEKLVKVRLD
HPIAVCLELA DAVKQAYGLK QVEVVPTDPG SDATATGIAE AGAAELERWL KRPDPLTIAM
GTGRTLRAMI DQLPQMDCPQ HKIVSLTGNI SPDGSAAYFN VIFSMADAVK ARHFPMPLPV
IVSSAEERDL LHRQPLVAPT IALGSQSDVT FVGIGEMTLN APLLQDGFLK EAEMRNLLAI
GATGEICGWI FDAKGKLLDD PVNSRVASMK IPSRQTSVVI GMARGKRKHA AIRAAARGGH
VNALIIDEDA ARYLLGL
|
|---|
| |