| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3553 |
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| Symbol | |
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| ID | 7388817 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 2947534 |
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| End bp | 2948868 |
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| Gene Length | 1335 bp |
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| Protein Length | 444 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643652385 |
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| Product | cytosine deaminase-like protein |
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| Protein accession | YP_002550568 |
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| Protein GI | 222149611 |
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| COG category | [F] Nucleotide transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0402] Cytosine deaminase and related metal-dependent hydrolases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | CTGATGACCA GATTGTTTGC CGACATTCCG CAAACCGGGC GGTTTGCCCT GACACGCGCC
ACCTTGCCTG TCGAAGCAGT TGATGATGTT CCCGCTGGAC CGGTCCGCGA GGGGCTGGTC
AGCGCCGATC TGATTATCAA CGACGGCAAG GTCGAAGCTA TTGTTAAGGT CGGCACCGCA
TCTCGTTACA AGACCGGAGC GGACCTGCCG ATCATCGATC TACGCGATGC CATGGTCTGG
CCGACCTTTA CCGACATGCA CACCCATCTC GACAAGGGCC ATATCTGGCC GCGAAAGCCC
AATCCAAAAG GCGATTTCAT CGGCGCATTG AGCGCCGTGA AGGATGACCG CGAGGCGAAT
TGGTCGGCGG ACGATGTGCG GGCACGGATG GAATTTTCGC TGCGCTGCGC CTATGCCCAT
GGCACCAGCC TGATCCGTAC CCATCTCGAC AGCAGCGCAC CTCAGCACCG GATTTCCTTT
GAGGTGTTTT CGCAGATACG CAAGGAGTGG GCGGGCCGGA TCGACCTTCA GGCGGTCGCC
CTTTTCCCCT TCGACGACAT CACCGATCAG GCGTTTTTTA GAGATTTGCT GGAGGTGCTT
GTTGCGCACA AGGGCATTCT CGGCGGCGTC ACCCAGGTCT CGCCGGATAT CGATCATCGG
CTGGACCTGT TGTTTCGCGC CGCAAGCGAC CACGGGCTCG ACATCGACCT GCATGTCGAT
GAGACCCAGG ATGCTTCCGT GCTGACCTTG AAATCCATTG CCGAGGCCAA GCTGCGCAAT
GGATTTCAAG GCTCGGTCGT GGTCGGCCAT TGCTGTTCAC TGACCCAGCA GAGCGACGAT
ATCGCCAAGG CCACCATCGA CAAGGTCGCG GAAGCCGGGC TTGCCGTCGT GTCACTACCG
ATGTGCAACA TGTATTTGCA GGATCGTCAT CCGGGCCGCA CGCCGCGCCA GCGCGGTGTC
ACCCTGTTTC ACGAACTGGC GGCGGCAGGT GTGCAGACGG CGGTTTCCTC CGACAATACC
CGCGATCCCT TCTATGCTTA TGGCGATCTC GATTGCGTGG AAGTGCTGCG CGAAGCGGTC
AGGATCGTCC ATCTCGATCA CCCGCTGGAC AGCACCGCCC GGATCGTCAC CCGCAGTCCC
GCCGATATTC TCGGACGTCC CGACCATGGC CGTATAAAGG TCGGGGCCAA GGCGGATCTG
GTGCTGTTTT CGGCGAGAAC CTGGAGCGAA TTGCTATCGC GTCCACAGTC TGACCGCACC
GTGTTGCGCT CCGGCCAGGC TATCGACGCG CAGGTGCCTG ACTACCGCGA CCTTGACCCT
TTGATGGAAG ATTGA
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| Protein sequence | MMTRLFADIP QTGRFALTRA TLPVEAVDDV PAGPVREGLV SADLIINDGK VEAIVKVGTA
SRYKTGADLP IIDLRDAMVW PTFTDMHTHL DKGHIWPRKP NPKGDFIGAL SAVKDDREAN
WSADDVRARM EFSLRCAYAH GTSLIRTHLD SSAPQHRISF EVFSQIRKEW AGRIDLQAVA
LFPFDDITDQ AFFRDLLEVL VAHKGILGGV TQVSPDIDHR LDLLFRAASD HGLDIDLHVD
ETQDASVLTL KSIAEAKLRN GFQGSVVVGH CCSLTQQSDD IAKATIDKVA EAGLAVVSLP
MCNMYLQDRH PGRTPRQRGV TLFHELAAAG VQTAVSSDNT RDPFYAYGDL DCVEVLREAV
RIVHLDHPLD STARIVTRSP ADILGRPDHG RIKVGAKADL VLFSARTWSE LLSRPQSDRT
VLRSGQAIDA QVPDYRDLDP LMED
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