| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3005 |
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| Symbol | |
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| ID | 7386164 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 2511068 |
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| End bp | 2512363 |
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| Gene Length | 1296 bp |
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| Protein Length | 431 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 643651992 |
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| Product | prophage MuSo2 F protein |
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| Protein accession | YP_002550176 |
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| Protein GI | 222149219 |
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| COG category | [S] Function unknown |
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| COG ID | [COG2369] Uncharacterized protein, homolog of phage Mu protein gp30 |
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| TIGRFAM ID | [TIGR01641] phage putative head morphogenesis protein, SPP1 gp7 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.680604 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGGCGA CGATCGCAGC GCTGAAGCCG GACGATGCCA TCAAGGCTCT GAAGGCGCGC
GGCGAACAGC TCGCGCCGTC CTTTTCCTGG CAGGACGTTT ATGCCGAGGA GCATGCCAAA
CAGTTCACGG TCGCCAAGTC GGCCGGTTTC GATATCCTCA CAGACCTTTT CGACGGGCTT
CAAACCAGCC TTGAAGAGGG CAAGACGTTT CGGGATTTCG CCAGCCAGGT GACGCCGGTT
CTCCAGGCTA AGGGCTGGTG GGGCGTCCAG GACGTGACCG ATCCAGTGAC AGGGGAGCTT
CGCAAAGCGC AGCTCGGCTC GACCCGTCGC CTGCAATTGA TCTTCGACGT GAACCTTCGC
GTCTCTTATG CGGCGGGTCA TTGGGCGGCC TTTGAGCGCA ACAAGGCGCG CCGGCCTTGG
CTGCGCTATG TCTGTATTCT GGACGACCAC ACCCGGCCGG AACACCGCAA GCGCCACAAT
CTTTGCCTGC CCGTCGATCA TCCCTATTGG GACACATGGG CACCGCCTTG TGGCTGGAAT
TGCCGCTGCA CGCTGCAAAG CCTGTCGGAT CGGGATGTCG AGCGGATGCG GGGTGAGTTG
AAGTTCACGC CGCCCGAAGA TGACTTCGTT GCCTTCACCA ACAAGCGCAC TGGCGAAGTC
CGGATGATCC CGCGCGGCAT CGATCCCGGT TGGGACCACA ATCCCGGCAA GGCTGGCTTT
CGGGCCTTCG ATGCGGCGGA AAAGCTGATC AATGCACCGC CGATCATGGC CGCCCAGGTC
AACAAAGATC CGGACTGGCT GGTCAAGCCG CTCGGCGATG ACTTTGCGAG GTGGTTTGAT
GCGGCCACAG CGGGCGGGCG CGTGGACCGG TCCATCATCG TGGTTGGCGC TTTGTCCGAG
GATGTCCTGG CATCTCTTGC CCAGGGCGGG ATTGCGCCGC AGTCAGGCGC GATCACCCTG
ACCCAGCAAG CTGCTCTGCA TATGATCCGC GATGCCAAGG CCGGAGTGGG AAAGACCGTC
GATATGGCGG CGCTTCGGCA ACTGCCGGCC AATCTCAGCC GGCCGAGGGC GGTCCTGCGG
GATAAGCGCG ACGGTGCGCT TCTCTATGTG TTCGACAGCG GCCAAGACCC GCGTCTGGCC
AAGATCGTTG TGAAGGTCGA TTTCGCAGAT AAGGCCCGGC CACCAGGGGG AAAAGCCCAG
ACGATCGTCA CCAATTCGAT CCGAACTGCG GGGCTGGTTG AAGCCCGCGT CCTGACAGAC
GAGAAGACTT ACGAGCTTAT CAGTGGGACG ATTTAG
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| Protein sequence | MTATIAALKP DDAIKALKAR GEQLAPSFSW QDVYAEEHAK QFTVAKSAGF DILTDLFDGL
QTSLEEGKTF RDFASQVTPV LQAKGWWGVQ DVTDPVTGEL RKAQLGSTRR LQLIFDVNLR
VSYAAGHWAA FERNKARRPW LRYVCILDDH TRPEHRKRHN LCLPVDHPYW DTWAPPCGWN
CRCTLQSLSD RDVERMRGEL KFTPPEDDFV AFTNKRTGEV RMIPRGIDPG WDHNPGKAGF
RAFDAAEKLI NAPPIMAAQV NKDPDWLVKP LGDDFARWFD AATAGGRVDR SIIVVGALSE
DVLASLAQGG IAPQSGAITL TQQAALHMIR DAKAGVGKTV DMAALRQLPA NLSRPRAVLR
DKRDGALLYV FDSGQDPRLA KIVVKVDFAD KARPPGGKAQ TIVTNSIRTA GLVEARVLTD
EKTYELISGT I
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