Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_2979 |
Symbol | omp |
ID | 7386145 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 2489104 |
End bp | 2489742 |
Gene Length | 639 bp |
Protein Length | 212 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 643651972 |
Product | outer membrane protein |
Protein accession | YP_002550157 |
Protein GI | 222149200 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3637] Opacity protein and related surface antigens |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACAAAC TGACCCTCCT TGCAACCGCT GCAACCCTCT TCGTATCGAC AGGCATTGCC ATGGCCGCCG ATGCAGTCGA CCAGGTTCCG ACAGCTCCTG CTGCTGTTGA AACCCCTGCG GCGTTTTCAT GGGCAGGCGG CTATATCGGC GTTTACGGTG GTTACGGCTG GCTGGATGCC ACACTGTCGC AGGGCGGCGC ATCGCTCTCG GATAATTTCG ATGGCGGTCG CATTGGCGGC TTTGGCGGCT GGAATTTCGA TGTCGGCCAC AACGTGATTC TCGGCGTAGA AGCCGATGTG AACTACGACT GGAACGAAAA CAACTATTCC GGCGTCAAGG TGGGCATGGA TGTCTCCGGC TCTGCCCGCG CCCGCGCCGG TTACGCCATT GACCGCGCCC TGATCTTTGT GGCTGGCGGC TGGACGGCGG ACAGAACCTA TATCAAGTCT TCGTCCGGCG ATTTCAACAA GACCCTGAAC GGCTGGACCA TCGGCGCTGG TGTGGACTAT GCGATTACCA ATCGCATCTT CACCCGCCTC GAATATCGCT ACAACGATTA CGGCACCAAA AATATCAGCG GCATCGATTT CGACAGCAAG CAGAATGTCG TCAATCTCGG CATCGGCATC AAATTCTGA
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Protein sequence | MNKLTLLATA ATLFVSTGIA MAADAVDQVP TAPAAVETPA AFSWAGGYIG VYGGYGWLDA TLSQGGASLS DNFDGGRIGG FGGWNFDVGH NVILGVEADV NYDWNENNYS GVKVGMDVSG SARARAGYAI DRALIFVAGG WTADRTYIKS SSGDFNKTLN GWTIGAGVDY AITNRIFTRL EYRYNDYGTK NISGIDFDSK QNVVNLGIGI KF
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