| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2922 |
|---|
| Symbol | |
|---|
| ID | 7386103 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 2439106 |
|---|
| End bp | 2439672 |
|---|
| Gene Length | 567 bp |
|---|
| Protein Length | 188 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 643651930 |
|---|
| Product | hydrolase |
|---|
| Protein accession | YP_002550115 |
|---|
| Protein GI | 222149158 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG1335] Amidases related to nicotinamidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.126039 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACACATT CCGACACCGC CCTGCTGGTC ATCGATGCAC AGCAATCCTT CCGCCACAGT
TCCTATTTCC GCGAGGACGA GTTGCCCGCC TATCTGGAGC GGCAGCAGGC GTTGATTGAT
GGCGCCCGCA AGGCGGGCAT TGCCACCGTT CAGATTTTCC ATTTGAACGA CACTGGCCCT
TTTAGCGAGG CCTCCGGATT CGTCTCCACA CTATCCCCTT TGACGATTGA ACCGGATGCG
GTTTTCCGCA AGCATCGGCA TAGCGCGCTG GTCGGTACGG GGCTTGATGT CTGGCTGACC
CGAAACAATA TCCGCCATCT GATCGTATCA GGTATCCGTA CGGAGCAATG TTGCGAAACC
ACGACACGTC ATGCTTCGGA CCTGGGCTAT AGCGTGGATT TTGTTGGTGA AGCCACCCTC
ACCTTTCCTA TGACCGACGA TCAGGGCCGT GAATGGAGCG CGGCGGAGAT CCGCGCCCGC
ACCGAACTGG TTTTGGCCGG TCGCTTCGCG CGCATTGCCA CGGTCGTGCA GGCATTGTCA
CTCCCACCCA CAACACTCGC GGCATAG
|
|---|
| Protein sequence | MTHSDTALLV IDAQQSFRHS SYFREDELPA YLERQQALID GARKAGIATV QIFHLNDTGP
FSEASGFVST LSPLTIEPDA VFRKHRHSAL VGTGLDVWLT RNNIRHLIVS GIRTEQCCET
TTRHASDLGY SVDFVGEATL TFPMTDDQGR EWSAAEIRAR TELVLAGRFA RIATVVQALS
LPPTTLAA
|
|---|
| |